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30,813 results for “type”
Effects of large mammal herbivory on salt marsh invertebrate communities varies with grazing type
We studied mammalian grazing (cattle, feral horses, and artificial grazing) on three barrier islands on the coast of Georgia, USA. All three grazing types altered invertebrate community composition, but in different ways. Cattle grazing had the most negative impact on plant height, chlorophyll content and toughness, and on the density and diversity of invertebrates, while artificial grazing produced some positive effects on planthoppers, herbivorous Chaetopsis spp. flies, and spiders. Although the responses to grazing of some plant traits and some invertebrate taxa were variable, plant height and katydid (Orchelimum fidicinium) density were consistently reduced by the three grazing types. Katydids did not have a feeding preference for grazed versus ungrazed plants, but grew better on ungrazed plants.
Forest Type Maps for New England from Historical Studies 1912-1956
This data package contains 3 GIS layers showing generalized forest types across New England as delineated in older forestry publications. These were digitized so that they can be used to illustrate broad vegetation patterns across the region in modern publications. These GIS layers include maps drawn by Hawley and Hawes (1912), RT Fisher (1933), and Westveld and the Committee on Silviculture, New England Section, Society of American Foresters (1956).
Bee species abundance and composition in three ecosystem types at the Sevilleta National Wildlife Refuge, New Mexico, USA
This study was designed to examine community- or population-level fluctuations in bee species at the Sevilleta National Wildlife Refuge, both intra- and inter-annually. From 2002 to 2019, passive funnel traps were used to collect bees at three sites, each representing a different ecosystem type of the southwestern U.S. (Plains grassland, Chihuahuan Desert grassland, and Chihuahuan Desert shrubland). Bees were collected during each month from March through October, and were identified to species by taxonomic experts.
A global map of terrestrial habitat types
<p>We provide a global spatially explicit characterization of 47 (version 001) terrestrial habitat types, as defined in the International Union for Conservation of Nature (IUCN) habitat classification scheme, which is widely used in ecological analyses, including for assessing species’ Area of Habitat. We produced this novel habitat map by creating a global decision tree that intersects the best currently available global data on land cover, climate and land use. The maps broaden our understanding of habitats globally, assist in constructing area of habitat (AOH) refinements and are relevant for broad-scale ecological studies and future IUCN Red List assessments. We hope that these data and outlined framework will spur further development of biodiversity-relevant habitat maps at global scales. An interactive interface helping to navigate the map can be found at on the Naturemap website ( https://explorer.naturemap.earth/map).</p> <p>Provided is the code to recreate the map (to made available soon), the global composite image at native -100m Copernicus resolution for level 1 and level 2 and layers of aggregated fractional cover (unit: [0-1] * 1000) at 1km for level 1 and level 2.</p> <p>Starting with version 004 there changemasks for the years 2016, 2017, 2018 and 2019 are supplied. Changemasks for the composite masks show the changed grid cells and their new values with earlier years being nested in later years, e.g. using the changemask for 2019 includes all changes up to 2019. For the fractional cover estimates at ~1km resolution, new fractional cover changemasks are supplied as subtraction (before - after) between the previous and current year (unit range: [-1 to 1] * 1000).</p> <p>We highlight that only changes in land cover are considered since most of the ancillary layers (e.g. pasture, forest management, climate, etc...) are static and thus not all changes in habitats can be found. We therefore recommend end users to continue using the 2015 dataset unless specific habitat updates to habitat are needed.</p> <p><strong>Citation:</strong></p> <p>Please cite the published paper and state the used version of the habitat map</p> <p>Jung, M., Dahal, P.R., Butchart, S.H.M., Donald, P.F., De Lamo, X., Lesiv, M., Kapos, V., Rondinini, C., Visconti, P., (2020). A global map of terrestrial habitat types. Sci. Data 7, 256. <a href="https://doi.org/10.1038/s41597-020-00599-8">https://doi.org/10.1038/s41597-020-00599-8</a></p>
Database of measurements for damage detection of T-type timber structural joint by Coaxial Correlation Method in 6-D space
<p>This database includes series of measurements of the structure's response taken in six-dimensional space using two 6D sensors, coaxially positioned on either side of the investigated joint between two timber beams connected at an angle of 90⁰. Presented data related to seven different states of joints, five load levels, and two type of input signal (short impulse and sweep signal with duration 0.5 seconds). In the "<strong>Read_me_first.pdf</strong>" is described the experiment, the format of .csv files names and files' structure.</p>
Power Balance Characteristics for Multirotor- and Fixed-Wing-Type UAV-BSs Equipped with RES and RISs
<h2><strong>Overview</strong></h2> <p>The following dataset presents the power balance characteristics for Unmanned Aerial Vehicle Base Stations (UAV-BSs) equipped with Renewable Energy Sources (RES) and Reconfigurable Intelligent Surfaces (RISs). The dataset has been prepared for two different types of UAVs, i.e., multirotor and fixed-wing ones.</p> <h2><strong>Scenario</strong></h2> <p>The considered scenario includes 2 UAV-BSs (each of a different type) equipped with a single RF transceiver and an RIS device and RES — a single photovoltaic panel (PV) and a single wind turbine (WT). The UAV-BSs are placed within the city of Poznan and hover (multirotor) or follow a circular route (fixed-wing) above a single mobile user with fixed traffic demand (100 Mbps downlink — DL, and 50 Mbps uplink — UL). The simulation runs have been performed for 4 dates (vernal equinox, summer solstice, autumn equinox, winter solstice), each one from a different season of the year. The aim of such an approach was to highlight the impact of the time of the day and the year on the energy gain obtained thanks to enabling RES generators as well as on the power consumption of the hardware of each UAV-BS type. The weather conditions assumed within the simulation are typical for the climate in Poland.</p> <h2><strong>Methodology</strong></h2> <p>The power-balance calculations (UAV-BSs' power consumption, renewable energy production) have been based on the mathematical formulas from the scientific literature and performed within the digital simulation runs by using dedicated software developed in Python programming language.</p> <h2><strong>Simulation setup</strong></h2> <p>The setup of the input parameters for used mathematical models (power consumption, energy generation) has been done in accordance with the values attached within the literature positions (cited within the publication included in the <em>Related works</em> section of the following dataset) and adjusted to the considered study. Furthermore, the data used to predict weather conditions are the real data (for the year 2022) collected by the weather stations placed in Poznan. A single simulation run has been performed (which takes into account 2 types of UAV-BS simultaneously and estimates their power balance for 4 seasons of the year), where the time step has been set to 1 hour of the day.</p> <h2><strong>Results</strong></h2> <p>The results of the aforementioned investigations have been included in the attached files (<em>_power_balance_multirotor.csv</em> & <em>_power_balance_fixed_wing.csv</em>). The first column denotes the hour of a particular day. Next, 4 multicolumns have been presented for the following variants — No RES enabled, only PV enabled, only WT enabled, and both types of RES generators enabled. In addition, each multicolumn consists of 4 columns, each of which represents a UAV-BS's hardware power balance (in W) for a different date (season of the year).</p> <h2><strong>Acknowledgment</strong></h2> <p>More details about the conducted study have been described within the attached paper (<em>Related works</em> section). The work (including the following dataset preparation) was realized within project no. 2021/43/B/ST7/01365 funded by the National Science Center in Poland.</p>
Dataset of "Preparation of novel lithiated high-entropy spinel type oxyhalides and their electrochemical performance in Li-ion batteries "
<p>Electrochemical measurements carried out using the 2032-coin cells with the Li-metal anode have shown voltammetric charge capacities of 450, 694, and 593 mAh g-1 for HEOFe, LiHEOFeCl, and LiHEOFeF, respectively.<br>Galvanostatic chronopotentiometry at 1 C rate confirmed high initial charge capacities for all the samples but galvanostatic curves exhibited a capacity decay over 100 charging/discharging cycles. Raman spectroelectrochemistry measured on the LiHEOFeF sample proved the reversibility of the electrochemical process for initial charging/discharging cycles. Electrochemical impedance spectroscopy revealed the lowest initial charge transfer resistance for LiHEOFeCl and its gradual decrease both for LiHEOFeCl and LiHEOFeF during galvanostatic cycling, whereas the charge transfer resistance of HEOFe slightly increases over 100 galvanostatic cycles due to different mechanism of the electrochemical reduction. </p>
Current and future European potential vegetation types
<p>This dataset contains Potential Natural Vegetation (PNV) estimates for the European continent at 1km grain size. Estimates are made for six different vegetation types following the MAES Ecosystem classification at level 1. The predictions have been made through an ensemble of Bayesian Habitat distribution models available through the <em>ibis.iSDM</em> package <a href="https://doi.org/10.1016/j.ecoinf.2023.102127" target="_blank" rel="noopener">(Jung 2023)</a>. For more information on the methodology, original data and used covariates, please see the accompanying preprint (<a href="https://doi.org/10.31223/X59H71">Jung 2024</a>).<br><br><strong>Uploaded are:</strong></p> <ul> <li>The most likely current PNV transition (see screenshot) as categorical raster (and screenshot, see png)<br>(Classes: 1=Woodland.and.forest | 2=Heathland.and.shrub | 3=Grassland | 4=Sparsely.vegetated.areas | 5=Wetlands | 6=Marine.inlets.and.transitional.waters)</li> <li>Current PNV estimates as cloud-optimized geoTIFF ("COG") files (.tif)</li> <li>Future PNV estimates (zipped) for each considered SSP - GCM combination as geoTIFF (.tif).</li> </ul> <p><strong>Variable naming scheme:</strong><br>Current: "pnv_XX_laea_1km.tif"<br>where XX represents the vegetation type<br>Future: Here the hierachical organization scheme of Essential Biodiversity Variables (EBV) is followed where files are separated in folders by<br>Scenario | metric | entity | time, so for example "SSP126-GFDL-ESM4/suitability_mean/grassland/"<br>Filenames are labelled by the date (e.g. "2040.tif").<br><br><strong>Metrics and layers names and their interpretation:</strong><br>For current:<br>"mean" = Average Ensemble posterior prediction<br>"sd" = Standard deviation of posterior prediction<br>"q05" = Lower percentile (5%) of posterior prediction<br>"q50" = Median or 50% percentile of posterior prediction<br>"q95" = Upper percentile (95%) of posterior prediction<br>"mode" = Most commonly encountered value of posterior prediction<br>"cv" = Coefficient of variation of posterior prediction<br><br>For future:<br>"mean" = Average Ensemble posterior prediction<br>"q05" = Lower percentile (5%) of posterior prediction<br>"q50" = Median or 50% percentile of posterior prediction<br>"q95" = Upper percentile (95%) of posterior prediction</p> <p>---<br><strong>Data properties:</strong></p> <table> <tbody> <tr> <td>Shared Socioeconomic Pathways (SSP)</td> <td>SSP1-2.6, SSP2-4.5, SSP5-8.5</td> </tr> <tr> <td>General circulation models (GCMs)</td> <td>GFDL-ESM4, <p>IPSL-CM6A-LR, </p> <p>MPI-ESM1-2-HR,</p> <p>MRI-ESM2-0,</p> <p>UKESM1-0-LL</p> </td> </tr> <tr> <td>Spatial grain</td> <td>1 km²</td> </tr> <tr> <td>Geographic projection</td> <td>LAEA</td> </tr> <tr> <td>Temporal grain</td> <td>30 year climatologies</td> </tr> <tr> <td>Spatial extent</td> <td>Continental Europe including Turkey (see screenshot)</td> </tr> <tr> <td>Temporal extent</td> <td>1990 to 2020 (Current), 2020 - 2100 (Future)</td> </tr> <tr> <td>Number of variables/entities</td> <td>7</td> </tr> </tbody> </table> <p>All files are provided as is and the author takes no responsibility for errors or misuse and misinterpretation. </p>
Dataset for "Modeling Dipolar Nonprotogenic Solvents with PC-SAFT-Type Equations of State: Pure Substance Properties"
<p>Dipolar nonprotogenic solvents (DNS) are important chemical substances used across a wide range of applications, including renewable green solvent media, sustainable energy sources, and as efficient solvents for fabricating and processing semiconductive materials used in organic photovoltaics. Therefore, for efficient solvent screening or process design, a description and prediction of the thermodynamic properties of DNS using thermodynamic models is essential. This dataset contains calculation results of four different modeling strategies within the PC-SAFT equation of state for pure-substance properties of six DNSs: gamma-valerolactone, propylene carbonate, acetonitrile, dihydrolevoglucosenone, 1-methyl-2-pyrrolidone, and sulfolane. The modeling strategies differ in the treatment of the strong dipolar interactions of DNSs. The pure-substance properties include liquid density, vapor pressure, enthalpy of vaporization, and residual isobaric liquid heat capacity. The PC-SAFT performance was analyzed and evaluated based on the calculated data. Additionally, the dataset includes input files for quantum mechanical calculations of optimal molecular geometries and dipole moments of the considered DNSs using Gaussian 16 software.</p>
Correspondence of the natural oscillation frequencies of perforated plates depending on the type of holes, plate material and thickness, type of fixing (CCCS or CSCS)
<p>The method involved the analysis of oscillations of base plates: solid non-perforated and with round holes, as well as perforated plates with holes of complex geometry in the form of a five-petal epicycloid.</p> <p>As a result of the modeling (Abaqus), the natural oscillations frequencies of the studied plates were obtained depending on the type of perforation, material, thickness and type of their fixing. The use of different materials (steel and aluminium) showed an insignificant influence on the natural oscillation frequency of the plates. It was found that the plate thickness has the greatest influence (31.85– 33.35%), the following are the hole parameters: partition width between holes; pitch between hole centers.</p> <p>Analysis of the results showed that the natural vibrations of plates with holes of complex geometry differ by up to 7% compared to plates with basic round holes. </p>
Global distribution of predicted soil types at 1 km resolution based on the WRB 2022 classification
<p>Global maps at 1 km spatial resolution of the predicted soil types (0–100% probabilities) at 1 km resolution based on the <a href="https://www.fao.org/soils-portal/data-hub/soil-classification/world-reference-base/en/">WRB 2022</a> (<strong>World Reference Base</strong> the international standard for soil classification) classification system. The training data comes from the following 3 main sources:</p> <ol> <li>WOSIS points available via: <a href="https://www.isric.org/explore/wosis">https://www.isric.org/explore/wosis</a>;</li> <li>HWSD v2 (random draw of cca 20,000 points): <a href="https://iiasa.ac.at/models-tools-data/hwsd">https://iiasa.ac.at/models-tools-data/hwsd</a>;</li> <li>Other national datasets / data from publications and projects.</li> </ol> <p>Predictions are based on using Rando Forest algorithm as implemented in the <a href="https://www.randomforestsrc.org/">randomForestSRC package</a> with cca 190 covariate layers representing soil forming factors (CHELSA Climate, Global Lithological DB GLiM, MODIS EVI and LST long-term derivatives, Digital Terrain model parameters and similar).</p> <p>All TIF files are provided as <a href="https://www.cogeo.org/">COGs</a>, which means that you can open them directly in QGIS or similar. Publication explaining all modeling steps is pending.</p> <p>Update of the predictions takes about 4–5 hrs and will be regularly run provided that new training points are available. Disclaimer: These are initial results with limited accuracy and possible issues with quality of training points, location errors and harmonization issues. Use at own risk.</p> <p>Note: original list of soil types have been subset to classes that appear at least 10 times and at least in 2 countries. If you notice an error or artifact <strong>please report via <a href="https://github.com/OpenGeoHub/SoilTypeMapping">the Github repository</a></strong>. Help us improve this dataset by contributing training points.</p>
Block summaries of biomass, carbon, nitrogen, and phosphorus allocation among tissue types, species, and plant functional types from Arctic LTER 1981 Moist Acidic Tussock (MAT81) long-term experiment harvests: 2000 and 2015, Toolik Lake Field Station, Alaska.
A complete accounting of biomass, C, N, and P allocation both among tissue types (leaves, stems, rhizomes, roots) and among species and plant functional types from Arctic LTER 1981 Moist Acidic Tussock (MAT81) long-term experiment’s untreated control plots and plots that were fertilized annually, harvested after 20 and 35 years, near Toolik Lake Field Station, Alaska. Data are gram per meter squared summarized by block.
Hubbard Brook Experimental Forest: Soil type prediction raster files
This dataset consists of raster files predicting spatial patterns in soils for the entire Hubbard Brook Experimental Forest. Eight soil units are used, following a hydropedologic approach, based on relationships between soil genetic horizon presence and thickness, and the frequency and depth of groundwater fluctuations. Nine raster files on a five-meter grid are presented, including one raster each showing the probability of presence of each of the eight soil units; the ninth raster represents the soil unit most likely to be present at each grid cell. The methods section of the metadata includes descriptions of the eight soil units and guidance for users of the model outputs. These data were gathered as part of the Hubbard Brook Ecosystem Study (HBES). The HBES is a collaborative effort at the Hubbard Brook Experimental Forest, which is operated and maintained by the USDA Forest Service, Northern Research Station.
Hubbard Brook Experimental Forest: Relations of the O-horizon with canopy tree species and hydropedologic soil types, 2021
As the interface between plants and soil, the organic horizon is the foundation of forest ecosystems. Two potential predictors of O-layer properties, vegetation and mineral soil type, are difficult to separate because they typically covary. We conducted a factorial study involving four canopy tree species and two soil types with distinctly different hydrology and topographic position to parse patterns in chemistry and microbiota of the O-layer in a north-temperate deciduous forest. These data were gathered as part of the Hubbard Brook Ecosystem Study (HBES). The HBES is a collaborative effort at the Hubbard Brook Experimental Forest, which is operated and maintained by the USDA Forest Service, Northern Research Station.
Cover and frequency of biological soil crust community types, moss species, vascular plants, and abiotic land surface features, on gypsum & non-gypsum soils from the Chihuahuan and Mojave Deserts in 2023
This dataset contains raw and calculated percent cover and frequency data for biological soil crust (hereafter biocrust) functional groups, vascular plant functional groups, and abiotic land surface features on and off gypsum soils in the northern Chihuahuan and eastern Mojave Deserts. Abundance data were obtained from 20 study sites total, 10 located on soils derived from gypsum parent material and 10 located on soils derived from non-gypsum parent materials. Sites were grouped into 10 pairs, in which every gypsum site was partnered with a non-gypsum site located in the same region. Apart from soil type, partnered-site characteristics (topography, climate, elevation, slope, aspect, and presence of biocrusts) were held relatively constant. At each site, cover and frequency assessments were made using the line-point intercept method (LPI) and frequency quadrats (1.0 m^2), respectively. Biocrust functional groups included the following crusts: lichen, moss, incipient algal, light algal, dark algal, unknown photosynthetic crust, and vagrant cyanobacteria. Vascular plant categories included: perennial forbs, perennial graminoids, annual forbs, annual graminoids, subshrub, shrub, Yucca, and cacti. Abiotic land surface features included: woody litter, herbaceous litter, bare soil, rock, bedrock, and animal feces. Moss crusts identified within cover and frequency analyses were sampled, and classified to species level via microscopy. The resulting percent cover and frequency data was used to understand differences in biocrust and moss species abundance and diversity on and off gypsum soils; furthermore, how biocrust and moss species abundance was associated with the measured environmental variables. Soil physical and chemical data from this study can be accessed at knb-lter-jrn.210616002. This study and dataset are complete.
MCR LTER: Coral Reef: Material legacy disturbance type model; data for Kopecky et al., 2023 Ecology
This data package contains the code necessary to create a mathematical model of coral reef recovery dynamics following different types and intensities of disturbances that either remove dead coral skeletons (e.g., tropical storms) or leave standing dead skeletons (e.g., coral bleaching) and run associated analyses. We explored the sensitivity of the model to variation in key parameters, such as the strength of herbivory, and the degree to which dead skeletons protect algae from herbivory. Further, we assessed disturbance intensities and values of these parameters that lead to shifts between coral and macroalgae-dominated reefs. This code was published in Ecology and were a part of the thesis of K. Kopecky (2023). Analyses and full methods descriptions of this model can be found in the manuscript “Material legacies can degrade resilience: Structure-retaining disturbances promote regime shifts on coral reefs” (DOI: https://doi.org/10.1002/ecy.4006). No novel data were used or generated in this study. This manuscript uses data collected by the U.S. National Science Foundation's (NSF) Moorea Coral Reef Long Term Ecological Research (MCR LTER) site under Grant No. OCE 2224354 (and earlier awards). Additional financial support to the MCR LTER site was provided through a generous gift from the Gordon and Betty Moore Foundation. Research was completed under permits issued by the French Polynesian Government (Délégation à la Recherche) and the Haut-commissariat de la République en Polynésie Francaise (DTRT) (Protocole d'Accueil 2005-2023).
Deep splicing plasticity of the human adenovirus type 5 transcriptome as a driver of virus evolution nanopore data 48hpi
<p>Adenovirus infected MRC5 cells direct RNA sequencing of the mRNA using nanopore. From the paper Deep splicing plasticity of the human adenovirus type 5 transcriptome as a driver of virus evolution. Both the uncorrected fastq files and the lordec corrected files together with the normalised illumina data used to correct the nanpore data are here.</p>
Data set for Global quantitative synthesis of ecosystem functioning across climatic zones and ecosystem types
<p>Dataset used in the publication: " Global quantitative synthesis of ecosystem functioning across climatic zones and ecosystem types". The dataset gathers estimates of ecosystem standing stocks (biomass, organic carbon, detritus), fluxes (GPP, ER, NEP) and process rates (decomposition and carbon uptake rates) for eight broad ecosystem types (forest, grassland, agroecosystem, desert, stream, lake, pelagic and benthic marine ecosystems) in five broad climatic zones (arctic, boreal, arid, temperate, tropical, arid).</p> <p>The scripts to produce the figures and the statistics of the publication are released along with the txt version of the data, which file is uploaded when running the script.</p>
Habitatquarries: distribution of underground marl quarries in the Flemish Region and border areas, with the Flemish distribution of Natura 2000 habitat type 8310
<p><strong>General</strong></p> <p>The data source is a geospatial collection of polygons that correspond with the presence or absence of the Natura 2000 Annex I habitat type 8310 (Caves not open to the public) in the Flemish Region (and border areas), Belgium. </p> <p>The dataset contains all known, not collapsed, underground marl quarries in Flanders. Several of these quarries have their entrance in or run underground to the neighboring regions/countries.</p> <p>In general, different polygons represent different quarry units with their own internal climatic environment. Units that cross Flemish borders have been split into separate polygons. Exceptionally they may overlap if such units are situated above each other. </p> <p>For safety reasons, the dataset only contains the contour of the quarries, and no details like floor plans or entrances. For admission to research the indoor climate, please contact the Quarries and Safety Department of the municipality of Riemst (<a href="https://www.riemst.be/nl/wonen/groeven">https://www.riemst.be/nl/wonen/groeven</a>; <a href="mailto:mike.lahaye@riemst.be">mike.lahaye@riemst.be</a>).</p> <p>The data source is produced, owned and administered by the Research Institute for Nature and Forest (INBO, a scientific institute of the Flemish government).</p> <p> </p> <p><strong>Technical aspects</strong></p> <p>The data source is a GeoPackage that contains:</p> <ul> <li> <p>a spatial polygon layer ‘<code>habitatquarries</code>’ in the Belgian Lambert 72 coordinate reference system (EPSG-code <a href="https://epsg.io/31370">31370</a>);</p> </li> <li> <p>a non-spatial table ‘<code>extra_references</code>’ with site-specific bibliographic references.</p> </li> </ul> <p>The data source has been based on an unpublished shapefile used in De Saeger & Lahaye (2019) and on a BibTeX bibliography file. See R-code in the GitHub repository <a href="https://github.com/inbo/n2khab-preprocessing/tree/c0821eb/src/generate_habitatquarries">'n2khab-preprocessing' at commit c0821eb</a> for the creation.</p> <p>A reading function to return <code>habitatquarries</code> (this data source) in a standardized way into the R environment is provided by the R-package <a href="https://inbo.github.io/n2khab/">n2khab</a>.</p> <p>The attributes of the spatial polygon layer ‘<code>habitatquarries</code>’ are: </p> <ul> <li> <p><code>polygon_id</code>: a unique number per polygon; </p> </li> <li> <p><code>unit_id</code>: a unique number for each quarry unit. Quarry units consisting of several polygons (= partly outside the Flemish region) have a number greater than 100;</p> </li> <li> <p><code>name</code>: name of the site;</p> </li> <li> <p><code>habitattype</code>: either:</p> <ul> <li> <p><code>8310</code> (habitat type 8310)</p> </li> <li> <p><code>gh</code> (no Natura 2000 type)</p> </li> <li> <p>missing (outside of the Flemish Region);</p> </li> </ul> </li> <li> <p><code>extra_reference</code>: extra reference with more information.</p> </li> </ul> <p>The non-spatial table <code>extra_references</code> provides the bibliography referred to by the spatial attribute <code>extra_reference</code>. It was derived from a BibTeX bibliography file by using the R-package <a href="https://docs.ropensci.org/bib2df">bib2df</a>, and it is back-convertible into one (see R-package <a href="https://inbo.github.io/n2khab/">n2khab</a>). The original bibliography file is also available in the above linked ‘n2khab-preprocessing’ repository.</p>
U2- and U12-type intron classifications for Physarum polycephalum in BED format
<p>A BED file containing intron information for <em>Physarum polycephalum</em> introns classified as U2- or U12-type by <a href="https://github.com/glarue/intronIC">intronIC</a>. This data is associated with the following manuscript: https://doi.org/10.1101/2020.10.12.336362; the genome and annotation file used to identify the introns are available here: https://doi.org/10.5281/zenodo.4086119.</p> <p> </p> <p>The file columns are:</p> <p>1. Genome FASTA record name (scaffold)</p> <p>2. Intron start coordinate (0-indexed)</p> <p>3. Intron end coordinate (1-indexed)</p> <p>4. Intron label from intronIC</p> <p>5. U12-type probability score (0-100); introns with scores > 95 were considered U12-type in the manuscript</p> <p>6. Strand</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.