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566 results for “Data Spaces”
Regional data sets of high-resolution (1 and 6 km) irrigation estimates from space
<p>The products are the first <strong>regional-scale and high-resolution (1 and 6 km) irrigation water data sets obtained from remote sensing observations</strong>. They cover three major river basins: the Ebro river basin (North-eastern Spain), the Po valley (Northern Italy), and the Murray-Darling basin (South-eastern Australia). The data sets are an outcome of the European Space Agency (ESA) Irrigation+ project (<a href="https://esairrigationplus.org/">https://esairrigationplus.org/</a>). The irrigation amounts have been estimated through the <strong>SM-based (Soil-Moisture-based) inversion approach</strong>. The satellite-derived irrigation products referring to the European sites have a spatial resolution of 1 km, and they are retrieved by exploiting Sentinel-1 soil moisture data obtained through the RT1 (first-order Radiative Transfer) model. A spatial sampling of 6 km is instead used for the Australian pilot area, since in this case the soil moisture information comes from CYGNSS (Cyclone Global Navigation Satellite System) observations. The three irrigation products are delivered with a weekly temporal aggregation. The 1 km data sets over the two European regions cover a period ranging from January 2016 to July 2020, while the irrigation estimates over the Murray-Darling basin are available for the time span April 2017 – July 2020. Details on the data sets development and on their performance assessment can be found in:</p> <p><strong>Dari, J.</strong>, Brocca, L., Modanesi, S., Massari, C., Tarpanelli, A., Barbetta, S., Quast, R., Vreugdenhil, M., Freeman, V., Barella-Ortiz, A., Quintana-Seguí, P., Bretreger, D., Volden, E. <strong>Regional data sets of high-resolution (1 and 6 km) irrigation estimates from space</strong>. <em>Earth System Science Data, </em>15, 1555–1575, https://doi.org/10.5194/essd-15-1555-2023, 2023.</p> <p> </p> <p><strong>Novelties in v1.1 with respect to v1.0:</strong></p> <p>v1.1 of irrigation estimates through the SM-based inversion approach are currently available for the Ebro basin and the Po valley only. The novelties with respect to the previous version are: (i) the use of high-resolution (1 km) potential evapotranspiration rates in the algorithm and (ii) temporal extension as now the data sets cover a 6-year period from January 2016 to December 2021.</p> <p><strong>Acknowledgements</strong>:</p> <p>ESA Irrigation+ project, <a href="https://esairrigationplus.org/">https://esairrigationplus.org/</a>, (contract n. 4000129870/20/I-NB).</p> <p>ESA 4DMED-Hydrology project, <a href="https://esairrigationplus.org/">https://www.4dmed-hydrology.org/</a>, (contract n. 4000136272/21/I-EF).</p>
Data files for:Critical assessment of the chemical space covered by LC-HRMS non-targeted analysis
<p>This upload contains the data for the review: "Critical assessment of the chemical space covered by LC-HRMS non-targeted analysis".</p> <p>All the files needed to run the code uploaded to GitHub (https://github.com/tobihul/CEC_review_code) can be found here.</p> <p>Included is: </p> <ul> <li>All 2657 structures found in the studied papers with their CID, InChIKey, and SMILES and whether they can be found in MassBank</li> <li>All the experimental parameters retrieved for each study in each category along with the general scope of each study</li> <li>The file with the CID, MW, XLogP3 and experimental parameters for each of the 61 papers</li> <li>The CSV file containing all classes of each of the compounds from the papers</li> <li>The CSV with all of the structures used to plot the chemical space of NORMAN SusDat (their CIDs)</li> </ul> <p> </p> <p> </p>
Human Inner Ear Anatomy: Labeled Volume CT Data of Inner Ear Fluid Space and Anatomical Landmarks
<p>The provided dataset comprises 43 instances of temporal bone volume CT scans. The scans were performed on human cadaveric specimen with a resulting isotropic voxel size of <span class="math-tex">\(99 \times 99 \times 99 \, \, \mathrm{\mu m}^3\)</span>. Voxel-wise image labels of the fluid space of the bony labyrinth, subdivided in the three semantic classes cochlear volume, vestibular volume and semicircular canal volume are provided. In addition, each dataset contains JSON-like descriptor data defining the voxel coordinates of the anatomical landmarks: (1) apex of the cochlea, (2) oval window and (3) round window. The dataset can be used to train and evaluate algorithmic machine learning models for automated innear ear analysis in the context of the supervised learning paradigm.</p> <p> </p> <p><strong>Usage Notes</strong></p> <p>The datasets are formatted in the HDF5 format developed by the <a href="https://www.hdfgroup.org/solutions/hdf5/">HDF5 Group</a>. We utilized and thus recommend the usage of Python bindings <a href="https://www.h5py.org/">pyHDF</a> to handle the datasets.</p> <p>The flat-panel volume CT raw data, labels and landmarks are saved in the HDF5-internal file structure using the respective group and datasets:</p> <pre><code>raw/raw-0 label/label-0 landmark/landmark-0 landmark/landmark-1 landmark/landmark-2</code></pre> <p>Array raw and label data can be read from the file by indexing into an opened h5py file handle, for example as numpy.ndarray. Further metadata is contained in the attribute dictionaries of the raw and label datasets.</p> <p>Landmark coordinate data is available as an attribute dict and contains the coordinate system (LPS or RAS), IJK voxel coordinates and label information. The helicotrema or cochlea top is globally saved in landmark 0, the oval window in landmark 1 and the round window in landmark 2. Read as a Python dictionary, exemplary landmark information for a dataset may reads as follows:</p> <pre><code class="language-python">{'coordsys': 'LPS', 'id': 1, 'ijk_position': array([181, 188, 100]), 'label': 'CochleaTop', 'orientation': array([-1., -0., -0., -0., -1., -0., 0., 0., 1.]), 'xyz_position': array([ 44.21109689, -139.38058589, -183.48249736])}</code></pre> <p> </p> <pre><code class="language-python">{'coordsys': 'LPS', 'id': 2, 'ijk_position': array([222, 182, 145]), 'label': 'OvalWindow', 'orientation': array([-1., -0., -0., -0., -1., -0., 0., 0., 1.]), 'xyz_position': array([ 48.27890112, -139.95991131, -179.04103763])}</code></pre> <p> </p> <pre><code class="language-python">{'coordsys': 'LPS', 'id': 3, 'ijk_position': array([223, 209, 147]), 'label': 'RoundWindow', 'orientation': array([-1., -0., -0., -0., -1., -0., 0., 0., 1.]), 'xyz_position': array([ 48.33120126, -137.27135678, -178.8665465 ])}</code></pre> <p> </p>
Neural Joint Space Implicit Signed Distance Functions [Data & Code]
<p>These data files containg code sources for dataset creation & model learning (neural-jsdf.zip) and collected synthetic dataset of free & collided postures for robotic arm Franka (sdf_3m_full_mesh.mat). Follow the Readme.MD files to launch the code if needed.</p> <p>Corresponding Git repo: https://github.com/epfl-lasa/Neural-JSDF</p>
iCub Joint Space Self-Collision Avoidance [Data & Code]
<p>These data files containg code sources for dataset creation & model learning (Joint-Space-SCA.zip) and collected synthetic dataset of free & collided postures for humanoid robot iCub (raw_binary_data.zip). Follow the Readme.MD files to launch the code if needed.</p><p>Corresponding Git repo: https://github.com/epfl-lasa/Joint-Space-SCA</p><p> </p>
PIE LTER fish and crab trap data associated with marsh sites used in space for time sea level rise study, Rowley, MA.
This dataset consists of assessments of crab and fish abundances using traps placed in creeks adjacent to marsh community survey transects at sites around the Rowley River and the south side of Sawyer Island at the Plum Island LTER. At each site, four sets of crab and fish traps were deployed for one week. Traps were sampled daily and all individuals were identified and then returned to the creek away from the area where traps were placed. See HTL-RO-ST-MAR-Sites for site description.
Data set for: Real-space Imaging of Confined Magnetic Skyrmion Tubes
<p>This repository contains the scripts and notebooks to reproduce the figures, simulations and numerical data shown in <strong>Real-space Imaging of Confined Magnetic Skyrmion Tubes</strong> by <em>M. T. Birch, D. Cortés-Ortuño, L. A. Turnbull, M. N. Wilson, F. Groß, N. Träger, A. Laurenson, N. Bukin, S. H. Moody, M. Weigand, G. Schütz, H. Popescu, R. Fan, P. Steadman, J. A. T. Verezhak, G. Balakrishnan, J. C. Loudon, A. C. Twitchett-Harrison, O. Hovorka, H. Fangohr, F. Ogrin, J. Gräfe and P. D. Hatton.</em></p> <p>Both simulation and experimental data analysis are performed using Python with the Matplotlib, Jupyter, Scipy, Numpy and h5py libraries.</p> <p>Jupyter notebooks are provided to process the experimental data and reproduce the STXM, X-Ray Holography and LTEM images, which are shown as Figures 2, 3, 4 and 5 in the paper.</p> <p>Simulation scripts are based on the finite difference micromagnetic code OOMMF with the extension to simulate DMI for materials with symmetry class <em>T</em>: [oommf-extension-dmi-t](https://github.com/joommf/oommf-extension-dmi-t)</p> <p>The analysis of OOMMF's output files, which are in the `OMF` format, are processed using the [OOMMFPy](https://github.com/davidcortesortuno/oommfpy) library, which can calculate the topological charge in a 2D slice.</p> <p>Three-dimensional visualisations of the magnetic states are performed using Paraview. In order to get VTK files for visualisation, convert the `OMF` files into `.vtk` using the `OOMMFPy` library.</p> <p> </p> <p>Latest version of this Data Set can be found at the Github repository:</p> <p><a href="https://github.com/davidcortesortuno/paper-2020_real-space_imaging_of_confined_magnetic_skyrmion_tubes">https://github.com/davidcortesortuno/paper-2020_real-space_imaging_of_confined_magnetic_skyrmion_tubes</a></p>
ERT data collected at the Corona volcano (Lanzarote, Canary Islands) during the European Space Agency (ESA) testing campaign PANGAEA-X 2017
<p>This dataset contains the ERT (Electrical Resistivity Tomography) data collected between 22 and 23 November 2017 at the Corona volcano (Lanzarote, Canary Islands, Fig. 1) for the detection of lava tubes and the stratigraphic investigation of planetary volcanic analogues. This geophysical survey was carried out within the European Space Agency (ESA) testing campaign PANGAEA-X 2017 (Bessone et al., 2018), aimed at integrating astronaut training-data collection, documentation, analogue field geology procedures with remote sensing and in situ geophysical methods. </p> <p>Two ERT profiles were acquired in NE-SW and NNE-SSW orientations (Fig. 1). These were located roughly orthogonal to the Corona lava tube system and as far as possible on top of the main lava tube axes. The longer profile, profile D, is 470 m in length and was obtained using 48 electrodes spaced 10 m apart. The profile orientation is from SW to NE (electrode 1 to 48). The profile was acquired to detect lava tubes in test site D (sub-area south) where the exact location of a lava tube was known thanks to a LiDAR TLS (Terrestrial Laser Scan) subsurface survey (Santagata et al., 2018). A shorter profile, profile E, is 235 m long and was obtained using 48 electrodes 5 m apart. The profile orientation is from SSW to NNE (electrode 1 to 48). This profile was acquired in test site E (sub-area north) to provide a more detailed investigation of the potential existence of inaccessible sections of the tube whose location could be indicated by the evidence of closely-spaced aligned collapse structures.</p> <p>Each profile was collected using measure sequences compounded by 276 Wenner-Schlumberger array quadrupoles which ensure high vertical resolution and signal amplitude and 328 dipole-dipole array quadrupoles which provide enhanced lateral resolution. A fully automatic multi-electrode resistivity meter SYSCAL Jr Switch-48 by IRIS Instruments (400 V max output voltage, 1200 mA max output current, 100 W max output power, <a href="http://www.iris-instruments.com/syscal-juniorsw.html">http://www.iris-instruments.com/syscal-juniorsw.html</a>), was used for data collection.</p> <p>At most of the measurement points, it was necessary to drill the basalt using a hand drilling machine in order to place the tips of the electrodes into the ground at a depth of approximately 40 cm. The electrodes also needed to kept moist to reduce contact resistance between the electrode and the ground. A large amount of water (up to 2 liters per point) was needed for profile D, situated in an area above the lava tubes with very porous dry soil cover.</p> <p>The dataset is presented as a spreadsheet format which has the "space" as separator and the ".txt" extension. The structure of such a file is the following one:</p> <p>#, El array, Spa1/4, Rho, Dev, M, Sp, Vp, In, Time, Spa5/12, M1/20</p> <p>- #: Data point number</p> <p>- El array: Electrode array</p> <p>- Spa. 1/4: four spacing parameters (corresponding to the electrode array – in m)</p> <p>- Rho: resistivity value (in Ohm.m)</p> <p>- Dev: standard deviation (quality factor, in %)</p> <p>- M: global chargeability value (induced polarization parameter (in mV/V – "=0" if only-resistivity data))</p> <p>- Sp: spontaneous polarization (measured just before the injection, in mV)</p> <p>- Vp: measured primary voltage (in mV)</p> <p>- In: injected current intensity (in mA)</p> <p>- Time: injection time (pulse duration, in s)</p> <p>- Spa. 5/8: other spacing parameters (in m)</p> <p>- Spa. 9/12: electrode elevation (in m)</p> <p>- M1/M20: partial chargeability values (induced polarization window (in mV/V – "=0" if only-resistivity data))</p> <p> </p> <p>Acknowledgements</p> <p>The authors are grateful to ESA and all PANGAEA-X 2017 staff, particularly Loredana Bessone, Matthias Maurer, Herve Stevenin and Igor Drozdovskiy for their participation in data collection during some of the experiments and to the MilesBeyond Team, particularly Francesco Maria Sauro for his logistical support. Regional and local remote sensing data were obtained by the Spanish Instituto Geográfico Nacional (https://www.ign.es) and Gobierno de Canarias (https://www.grafcan.es, <a href="https://opendata.sitcan.es/">https://opendata.sitcan.es</a>).</p> <p> </p> <p>References</p> <p>Bessone, L., et al., 2018, Testing technologies and operational concepts for field geology exploration of the Moon and beyond: the ESA PANGAEA-X campaign, Geophysical Research Abstract, #EGU2018-4013.</p> <p>Santagata, T., Sauro, F., Massironi, M., Pozzobon, R., Del Vecchio, U., Lazzaroni, M., Damiano, N., Tonello, M., Tomasi, I., Martínez-Frìas, J. and Mateo Medero, E., 2018. Subsurface laser scanning and photogrammetry in the Corona Lava Tube System, Lanzarote, Spain, EGU General Assembly 2018, pp. EGU2018-5290.</p>
Hubei STEC Data through CORS stations for DOY 059 and 061 of the year 2018 which used in (Using Real GNSS Data for Ionospheric Disturbance Remote Sensing Associated with Strong Thunderstorm over Wuhan City, manuscript submitted to Earth and Space Science Journal AGU)
<p>Manuscript submitted to Earth and Space Science AGU entitled with <br> (Using Real GNSS Data for Ionospheric Disturbance Remote Sensing Associated with Strong Thunderstorm over Wuhan City)<br> by: Mohamed Freeshah, Xiaohong Zhang, Xiaodong Ren, Jun Chen, and Zhibo Zhao</p> <p>The STEC data inside two compressed folders named as stec059 and stec061, respectively.<br> The STEC file name has the CORS station name for the first forth letters and next three numbers epresent the Day of the year.<br> For example:<br> ES010590.18STEC<br> ES01 is the station name<br> 059 is the day of year (DOY), 2018</p>
Data on parties' positions in multiple dimensions across time and space
<p>These files contain data on parties’ positions in latent political spaces, reconstructed based on data from the <a href="https://manifestoproject.wzb.eu/">Manifesto Project</a> (also known as the ‘Comparative Manifestos Project’) using the method published in <em>Political Analysis</em> as <a href="https://doi.org/10.1093/pan/mps042">“A Dynamic State-Space Model of Coded Political Texts”</a>.</p>
New fault slip distribution for the 2010 Mw 7.2 El Mayor Cucapah earthquake based on realistic 3D finite element inversions of coseismic displacements using space geodetic data
<p>The .csv files included in this repository contain the data used in the numerical model as input, while the .txt file is the output (slip on a regular grid of points on the fault planes from the joint inversion of the geodetic datasets.</p>
Data from: Transformation of measurement uncertainties into low-dimensional feature vector space
<p>Advances in technology allow the acquisition of data with high spatial and temporal resolution. These datasets are usually accompanied by estimates of the measurement uncertainty, which may be spatially or temporally varying and should be taken into consideration when making decisions based on the data. At the same time, various transformations are commonly implemented to reduce the dimensionality of the datasets for post-processing, or to extract significant features. However, the corresponding uncertainty is not usually represented in the low-dimensional or feature vector space. A method is proposed that maps the measurement uncertainty into the equivalent low-dimensional space with the aid of approximate Bayesian computation, resulting in a distribution that can be used to make statistical inferences. The method involves no assumptions about the probability distribution of the measurement error and is independent of the feature extraction process as demonstrated in three examples. In the first two examples Chebyshev polynomials were used to analyse structural displacements and soil moisture measurements; while in the third, principal component analysis was used to decompose global ocean temperature data. The uses of the method range from supporting decision making in model validation or confirmation, model updating or calibration and tracking changes in condition, such as the characterisation of the El Niño Southern Oscillation. </p>
Data supplementing the article "Einhäuser, W., & Nuthmann, A. (2016). Salient in space, salient in time: Fixation probability predicts fixation duration during natural scene viewing. Journal of Vision, 16(11):13, 1-17, doi:10.1167/16.11.13."
<p>These data supplement the article Einhäuser, W., & Nuthmann, A. (2016). Salient in space, salient in time: Fixation probability predicts fixation duration during natural scene viewing. Journal of Vision, 16(11):13, 1-17, doi:10.1167/16.11.13.</p> <p>The data can be used freely for academic purposes, provided the aforementioned reference is appropriately cited.</p> <p>The following files are available for experiment 2 of the article:</p> <p>allData.mat</p> <p>Includes the datamatrix allData with the following columns:</p> <p>1) Line used for analysis in the article (0 - no, 1-yes).<br> Possible reasons for exclusion:<br> a. fixation duration smaller than 50ms or larger 1000ms<br> b. fixation adjacent to a blink (preceding or following)<br> c. fixation outside the image</p> <p>2) ID of observer (1-24)</p> <p>3) ID of condition (1:grayscale, 2: reduced luminance, 3: reduced contrast, 4: equalized luminance, 5: equalized contrast, 6: phasenoise)</p> <p>4) ID of image (48 unique numbers between 1 and 135)</p> <p>5) horizontal eye position</p> <p>6) vertical eye position</p> <p>7) fixation duration in ms</p> <p>8) value of empirical map generated from search condition of experiment 1 at fixated location</p> <p>9) value of empirical map generated from preference condition of experiment 1 at fixated location</p> <p>10) value of empirical map generated from memorization condition of experiment 1 at fixated location</p> <p>11) value of empirical map generated from joining memorization and preference condition of experiment 1 at fixated location</p> <p>12) value of empirical map generated from condition 1 at fixated location</p> <p>13) value of empirical map generated from condition 2 at fixated location</p> <p>14) value of empirical map generated from condition 3 at fixated location</p> <p>15) value of empirical map generated from condition 4 at fixated location</p> <p>16) value of empirical map generated from condition 5 at fixated location</p> <p>17) value of empirical map generated from condition 6 at fixated location</p> <p>18) value of empirical map generated from condition 1 at fixated location leaving out the current observer</p> <p>19) value of empirical map generated from condition 2 at fixated location leaving out the current observer</p> <p>20) value of empirical map generated from condition 3 at fixated location leaving out the current observer</p> <p>21) value of empirical map generated from condition 4 at fixated location leaving out the current observer</p> <p>22) value of empirical map generated from condition 5 at fixated location leaving out the current observer</p> <p>23) value of empirical map generated from condition 6 at fixated location leaving out the current observer</p> <p>24) luminance at fixation</p> <p>25) luminance contrast at fixation</p> <p>26) edge density at fixation</p> <p>27) eccentricity of fixation</p> <p> </p> <p>usedData.Rdata</p> <p>- for all lines that are used for analysis (allData(:,1)==1) a field in an R dataframe is created, which contains the following fields (for details, see description of matlab file above):</p> <p>obsNum: the ID of the observer (1-24)</p> <p>condNum: the ID of the condition (1-6)</p> <p>imgNum: the ID of the image (48 unique numbers between 1 and 135)</p> <p>fixDur: fixation duration</p> <p>LUM, LCG, ED, ECC: luminance, contrast, edge density and eccentricity at fixation</p> <p>empMapFromSearch, empMapFromPref, empMapFromMem, empMapFromJoint: values of empirical maps generated from data of experiment 1 (search, preference, memorization task as well as combination of the latter two) at fixation</p> <p>empMapFromC1 through empMapFromC6: value of empirical map generated from condition 1 through 6 at fixated location</p> <p>empMapFromC1loo through empMapFromC6loo - value of empirical map generated from condition 1 through 6 at fixated location leaving out the current observer</p> <p>x,y - coordinates of fixation</p> <p> </p> <p>modelsFigure7.R - computes all models for figure 7 of the aforementioned article (Note: depending on your system, this can take substantial time; depending on the version of the lme-package results may deviate slightly from those given in the paper)</p> <p>modelsFigure8.R - computes all models for figure 8 of the aforementioned article (Note: depending on your system, this can take substantial time; depending on the version of the lme-package results may deviate slightly from those given in the paper)</p> <p> </p>
Data from the paper "RFI flagging in solar and space weather low frequency radio observations' by Zhang et al. 2023
<p>Data from the paper "RFI flagging in solar and space weather low frequency radio observations' by Zhang et al. 2023</p>
Input geophysical and geological data for "Geologically constrained geometry inversion and null-space navigation to explore alternative geological scenarios: a case study in the Western Pyrenees"
<p>This is a companion dataset to the manuscript: <br><br>Geologically constrained geometry inversion and null-space navigation to explore alternative geological scenarios: a case study in the Western Pyrenees,</p><p>by: Jeremie Giraud , Mary Ford, Guillaume Caumon, Lachlan Grose, Vitaliy Ogarko, Roland Martin, and Paul Cupillard.<br><br>This dataset contains the input data used in the inversion, in terms of the gravity data and the geological data used in the inversion.<br><br>The *.txt file contains the gravity data as inverted in the manuscript: X, Y, Z, Value.<br>The *.csv file contains the geological data: location of the contacts and orientation data.</p>
Data and code from: SIDERITE: Unveiling Hidden Siderophore Diversity in the Chemical Space Through Digital Exploration
<h1>TMAP of COCONUT database</h1> <p>The script and data used in SIDERITE paper to generate TMAP picture (Figure S3 in supplementart material).</p> <p>Requirement: tmap</p> <p>You can install tmap by conda.</p> <blockquote> <p>conda create -n tmap python=3.7</p> <p>conda activate tmap</p> <p>conda install -c tmap tmap</p> <p>pip install faerun</p> <p>pip install matplotlib</p> <p>conda install scipy</p> <p>conda install -c rdkit rdkit</p> <p>conda install -c conda-forge mhfp</p> </blockquote> <p> </p> <p>Usage: python plot_COCONUT.py</p> <p>Then it will use COCONUT.csv to generate index.html and index.js. Open index.html to see result.</p> <h1>Other large input files</h1> <p>Tanimoto_COCONUT_SIDERITE.xlsx is the input file in <a href="https://github.com/RuolinHe/SIDERITE/blob/main/predicted_new/Clustering_coconut.m">SIDERITE/predicted_new/Clustering_coconut.m at main · RuolinHe/SIDERITE</a>.</p> <p> </p> <p>Sid_structure_output3.xlsx is used in <a href="https://github.com/RuolinHe/SIDERITE/blob/main/statistics/Figure1.m" target="_blank" rel="noopener">SIDERITE/statistics/Figure1.m at main · RuolinHe/SIDERITE</a>, <a href="https://github.com/RuolinHe/SIDERITE/blob/main/TAMP/tmap_code.m" target="_blank" rel="noopener">SIDERITE/TAMP/tmap_code.m at main · RuolinHe/SIDERITE</a> and <a href="https://github.com/RuolinHe/SIDERITE/blob/main/siderophore_process/Sid_process_code.m" target="_blank" rel="noopener">SIDERITE/siderophore_process/Sid_process_code.m at main · RuolinHe/SIDERITE</a>.</p> <p> </p> <p>COCONUT4MetFrag_Canonical.xlsx is the input file in <a href="https://github.com/RuolinHe/SIDERITE/blob/main/TAMP/tmap_code.m" target="_blank" rel="noopener">SIDERITE/TAMP/tmap_code.m at main · RuolinHe/SIDERITE</a>.</p> <p> </p> <p>COCONUT_r.txt is the output file in <a href="https://github.com/RuolinHe/SIDERITE/blob/main/TAMP/tmap_code.m" target="_blank" rel="noopener">SIDERITE/TAMP/tmap_code.m at main · RuolinHe/SIDERITE</a>. and the input file in <a href="https://github.com/RuolinHe/SIDERITE/blob/main/predicted_new/isSiderophore1.py" target="_blank" rel="noopener">SIDERITE/predicted_new/isSiderophore1.py at main · RuolinHe/SIDERITE.</a></p> <p> </p> <p>COCONUT4MetFrag.xlsx is the input file in <a href="https://github.com/RuolinHe/SIDERITE/blob/main/TAMP/CheckSMILES2.py" target="_blank" rel="noopener">SIDERITE/TAMP/CheckSMILES2.py at main · RuolinHe/SIDERITE</a>.</p> <p> </p>
Data from: Ecological and anthropogenic drivers of waterfowl productivity are synchronous across species, space, and time
<p>We used hierarchical random-effects models to examine interspecific and spatial variation in annual productivity in six migratory ducks (i.e., American wigeon [<em>Mareca americana</em>], blue-winged teal [<em>Spatula discors</em>], gadwall [<em>Mareca strepera</em>], green-winged teal [<em>Anas crecca</em>], mallard [<em>Anas platyrhynchos</em>] and northern pintail [<em>Anas acuta</em>]) across six distinct ecostrata in the Prairie Pothole Region of North America (Alberta parkland, Alberta prairie, Saskatchewan parkland, Saskatchewan prairie, Manitoba parkland, US prairie). We tested whether breeding habitat conditions (seasonal pond counts, agricultural intensification, and grassland acreage) or cross-seasonal effects (indexed by flooded rice acreage in primary wintering areas) better explained variation in the proportion of juveniles captured during late summer banding. This submission comprises model code and data of banded birds by species, breeding population survey by species, proportion of ecostratum in conservation tillage (a proxy for agriculutral intensification), proportion of ecostratum in grassland, mean winter precipitation for Pacific Coast and Gulf Coast, total hectares of rice planted in the US, as well as hectares of flooded rice in the Pacific Coast and Gulf Coast. </p>
Data accompanying manuscript: 'Antarctic subglacial topography mapped from space reveals complex mesoscale landscape dynamics'
<p>This upload contains the data which accompanies the manuscript: 'Antarctic subglacial topography mapped from space reveals complex mesoscale landscape dynamics'.</p> <p><strong>Metrics calculated for each of the 4269 50 km by 50 km regions</strong></p> <table> <tbody> <tr> <td>Filename (IFPA)</td> <td>Filename (Bedmachine)</td> <td>Filename (Bedmap3)</td> <td>Description</td> </tr> <tr> <td>x_ifpa.nc<br>y_ifpa.nc</td> <td> </td> <td> </td> <td>X and Y coordinates</td> </tr> <tr> <td>mean_ifpa.nc or ifpa_mean.nc</td> <td>bedmach_mean.nc</td> <td> </td> <td>Mean elevation (m)</td> </tr> <tr> <td> <p>ifpa_count.nc<br>ifpa_count_max_20.nc<br>ifpa_count_max_100.nc<br>ifpa_count_max_250.nc</p> </td> <td>bedmach_count.nc<br>bedmach_count_max_20.nc<br>bedmach_count_max_100.nc<br>bedmach_count_max_250.nc</td> <td> </td> <td> <p>The number of hills with a 50 m prominence within a 5 km neighbourhood <br>(or 20 m, 100 m, 250 m respectively)</p> </td> </tr> <tr> <td>ifpa_b1_5km.nc<br>ifpa_b1_thickness.nc</td> <td>bedmach_b1_5km.nc<br>bedmach_b1_thickness.nc</td> <td> </td> <td>The fourier fractal dimension for wavelengths greater than 5 km or the ice thickness respectively</td> </tr> <tr> <td>ifpa_std_deslope.nc<br>i_std_l.nc</td> <td>bedmach_std_deslope.nc<br>b_std_l.nc</td> <td> </td> <td>The standard deviation:<br>- with the best fit slope removed<br>- of some long wavelength components of the fourier spectrum</td> </tr> <tr> <td>ifpa_wav_max_power.nc</td> <td>bedmach_wav_max_power.nc</td> <td> </td> <td>The wavelength in the Fourier spectrum with the maximum power</td> </tr> <tr> <td>ifpa_rms_slope.nc<br>i_rms_slope_h.nc</td> <td>bedmach_rms_slope.nc<br>b_rms_slope_h.nc</td> <td> </td> <td>The RMS slope of:<br>- the bed elevation<br>- some short wavelength components of the fourier spectrum</td> </tr> <tr> <td>ifpa_rms_curvature.nc</td> <td>bedmach_rms_curvature.nc</td> <td> </td> <td>The RMS curvature of the bed elevation</td> </tr> <tr> <td> </td> <td>source.nc</td> <td> </td> <td>The method used to calculate the bed topography (Bedmachine only)</td> </tr> <tr> <td> </td> <td> </td> <td>mean_nearest.nc</td> <td>The mean distance from each IFPA grid point to the nearest Bedmap3 data point</td> </tr> <tr> <td> </td> <td> </td> <td>bedmap3_count.nc</td> <td>The number of Bedmap3 data points within the region</td> </tr> </tbody> </table> <p> </p> <p><strong>Datasets required for plotting</strong></p> <table> <tbody> <tr> <td>Filename</td> <td>Description</td> </tr> <tr> <td>Groundingline_Antarctica_v2.shp</td> <td>Antarctic grounding line </td> </tr> <tr> <td>ECR_features.shp</td> <td>Outline of significant features within the example regions chosen</td> </tr> <tr> <td>IFPA_bed.nc</td> <td>OLD VERSION of IFPA bed topography map for Antarctica</td> </tr> <tr> <td> <p>IFPA_bed_C50.nc</p> </td> <td>IFPA bed topography map for Antarctica (without radar correction)</td> </tr> </tbody> </table> <p><strong>To plot the figures, you will either require the following datasets: </strong></p> <table> <tbody> <tr> <td>Filename</td> <td>Description</td> </tr> <tr> <td>IFPA_figures_data.zip</td> <td>Additionally data to plot figures 1,6,8 and 9 </td> </tr> <tr> <td> <p>HA_data.csv<br>HB_data.csv<br>RSB_data.csv</p> </td> <td>For Highland A, Highland B and Recovery Subglacial Basin<br>IFPA (radar corrected), IFPA (not radar corrected), Bedmachine v3, and ice-penetrating radar profiles</td> </tr> <tr> <td> <p>HA_data_ifpa.csv<br>HB_data_ifpa.csv<br>RSB_data_ifpa.csv</p> </td> <td> <p>For Highland A, Highland B and Recovery Subglacial Basin<br>IFPA (radar corrected) map for the region crossed by the ice-penetrating radar profile</p> </td> </tr> </tbody> </table> <p><strong>or, the figures can be regenerated using the following datasets, which are available at the listed DOIs</strong></p> <table> <tbody> <tr> <td>Filename</td> <td>Description</td> <td>Reference</td> <td>DOI</td> </tr> <tr> <td>GaplessREMA100.nc</td> <td>Gapless REMA Antarctica dataset at 100m resolution</td> <td>Dong et al. (2022)</td> <td>10.1016/j.isprsjprs.2022.01.024</td> </tr> <tr> <td>BedMachineAntarctica-v3.nc</td> <td>MEaSURES BedMachine Antarctica bed topography map version 3</td> <td>Morlighem et al. (2020)</td> <td>10.5067/FPSU0V1MWUB6</td> </tr> <tr> <td>antarctica_ice_velocity_450m_v2.nc</td> <td>ITSLIVE Antarctic velocity map</td> <td>Gardner et al. (2019)</td> <td>10.5067/6II6VW8LLWJ7</td> </tr> <tr> <td>antarctic_ice_vel_phase.nc</td> <td>MEaSURES Antarctic velocity map</td> <td>Mouginot et al. (2019)</td> <td>10.5067/PZ3NJ5RXRH10</td> </tr> <tr> <td>UTIG_2010_ICECAP_AIR_BM3.csv</td> <td>Bed elevation from airborne radar from the UTIG Icecap survey</td> <td>Wright et al. (2012)</td> <td>10.1029/2011JF002066</td> </tr> <tr> <td>BAS_2012_ICEGRAV_AIR_BM3.csv</td> <td>Bed elevation from airborne radar from the BAS Icegrav survey</td> <td>Forsberg et al. (2018)</td> <td>10.1144/SP461.17</td> </tr> </tbody> </table> <p><strong> </strong></p>
Data for: Mapping the Limits of Passive Samplers in Water: Chemical Space Coverage Using Nontargeted LC-HRMS Analysis
<p>This dataset provides files for passive samplers nad blanks analyzed by LC-HRMS fullscan DIA MS2.</p> <p>Excel file provides information about passive samplers, sampling site and sample files.</p>
Data for a publication "Labyrinth Seal Design for Space Applications"
<p>The presented dataset contains raw and processed data from evaporation tests, simulations, and surface analyses aimed at optimizing labyrinth seal configurations for space applications. It includes experimental measurements from a custom-built evaporation test rig, simulation data from COMSOL Multiphysics (using Molecular Flow and Particle Tracing Modules), and surface roughness analyses from a 3D Optical Profilometer. Supporting MATLAB scripts for data processing, along with detailed subfolders for experimental and simulation data, provide a comprehensive resource for evaluating labyrinth seal performance and minimizing lubricant evaporation.</p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.