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113 results for “Integration of morphological and molecular data”
FIGURE 4. Families Eriphiidae and Menippidae. A in Checklist of decapod crustaceans from the coast of the São Paulo state (Brazil) supported by integrative molecular and morphological data: III. Infraorder Brachyura Latreille, 1802
FIGURE 4. Families Eriphiidae and Menippidae. A) Eriphia gonagra (Fabricius, 1781) (CCDB 4895). B) Menippe nodifrons Stimpson, 1859 (CCDB 5071). Animals from Brazil, São Paulo state: São Sebastião (A), Ubatuba (B). Sex: males. Scale bars (mm): A—30; B—9. Photographs by R.C. Buranelli.
FIGURE 13. Family Mithracidae. A in Checklist of decapod crustaceans from the coast of the São Paulo state (Brazil) supported by integrative molecular and morphological data: III. Infraorder Brachyura Latreille, 1802
FIGURE 13. Family Mithracidae. A) Mithraculus coryphe (Herbst, 1801) (CCDB 5041). B) Mithraculus forceps A. Milne-Edwards, 1875 [in A. Milne-Edwards, 1873–1880] (CCDB 5079). C) Mithraculus sculptus (Lamarck, 1818) (CCDB 5091). D) Mithrax hispidus (Herbst, 1790) (CCDB 2950). E) Mithrax tortugae (Rathbun, 1920) (CCDB 4896). F) Omalacantha bicornuta (Latreille, 1825) (CCDB 1422). G) Teleophrys pococki Rathbun, 1901 (CCDB 5272). Animals from Brazil, São Paulo state: Ubatuba (A, B, C, E, F), São Sebastião (D). Sex: male (A, B, C, E, F, G), female (D). Scale bars (mm): A—5; B—10; C—11; D—30; E—22; F—10; G—6. Photographs by R.C. Buranelli.
FIGURE 2. Families Aethridae and Calappidae. A in Checklist of decapod crustaceans from the coast of the São Paulo state (Brazil) supported by integrative molecular and morphological data: III. Infraorder Brachyura Latreille, 1802
FIGURE 2. Families Aethridae and Calappidae. A) Hepatus pudibundus (Herbst, 1785) (CCDB 5088). B) Calappa gallus (Herbst, 1803) (CCDB 10). C) Cryptosoma balguerii (Desbonne, in Desbonne & Schramm, 1867) (CCDB 6417). Animals from Brazil, São Paulo state: Cananéia (A), Ubatuba (B, C). Sex: male (A), female (B, C). Scale bars (mm): A—25; B—18; C—18. Photographs A and B, by R.C. Buranelli; C, extracted from Tamburus et al. (2019).
FIGURE 1 in Checklist of decapod crustaceans from the coast of the São Paulo state (Brazil) supported by integrative molecular and morphological data: III. Infraorder Brachyura Latreille, 1802
FIGURE 1. Five major sample regions (with ten main areas) of brachyuran crabs along the São Paulo coast during 2011–2019 periods (UBA: Ubatuba, CAR: Caraguatatuba, SBA: São Sebastião, IBE: Ilhabela, SAN: Santos, SVI: São Vicente, CAN: Cananéia/Ilha Comprida, SM: RV Soloncy Moura Expedition). The fourteen sample points of RV Soloncy Moura Expedition were summarized in three major areas (SMA: sampling points 5–8 and 10–13; SMB: sampling points 3, 4, 9, 14; SMC: sampling points 1 and 2, see Table I). Scale bar: kilometers.
FIGURE 5. Families Euryplacidae and Gecarcinidae. A in Checklist of decapod crustaceans from the coast of the São Paulo state (Brazil) supported by integrative molecular and morphological data: III. Infraorder Brachyura Latreille, 1802
FIGURE 5. Families Euryplacidae and Gecarcinidae. A) Frevillea hirsuta (Borradaile, 1916) (CCDB 5872). B) Cardisoma guanhumi Latreille in Latreille, Le Peletier, Serville & Guérin, 1828 (CCDB 4893). Animals from Brazil, São Paulo state: RV Soloncy Moura Expedition, Point 1 (A), Ubatuba (B). Sex: female (A), male (B). Scale bars (mm): A—14; B—45. Photographs by R.C. Buranelli.
FIGURE 8. Family Varunidae. A in Checklist of decapod crustaceans from the coast of the São Paulo state (Brazil) supported by integrative molecular and morphological data: III. Infraorder Brachyura Latreille, 1802
FIGURE 8. Family Varunidae. A) Cyclograpsus integer H. Milne Edwards, 1837 (CCDB 5625). B) Neohelice granulata (Dana, 1851) (CCDB 6180). Animals from Brazil, São Paulo state, Ubatuba. Sex: male (A), juvenile (B). Scale bars (mm): A—10; B—10. Photographs by R.C. Buranelli.
FIGURE 6. Family Grapsidae. A in Checklist of decapod crustaceans from the coast of the São Paulo state (Brazil) supported by integrative molecular and morphological data: III. Infraorder Brachyura Latreille, 1802
FIGURE 6. Family Grapsidae. A) Geograpsus lividus (H. Milne Edwards, 1837) (CCDB 5076). B) Goniopsis cruentata (Latreille, 1803) (CCDB 5053). C) Pachygrapsus gracilis (de Saussure, 1857) (CCDB 5045). D) Pachygrapsus transversus (Gibbes, 1850) (CCDB 5052). Animals from Brazil, São Paulo state: Cananéia (A, C), Ilha Comprida (B), Ubatuba (D). Sex: male (A, B, D), female (C). Scale bars (mm): A—33; B—45; C—10; D—16. Photographs by R.C. Buranelli.
FIGURE 3. Family Dromiidae. A in Checklist of decapod crustaceans from the coast of the São Paulo state (Brazil) supported by integrative molecular and morphological data: III. Infraorder Brachyura Latreille, 1802
FIGURE 3. Family Dromiidae. A) Dromia erythropus (Edwards, in Catesby, 1771) (CCDB 4894). B) Hypoconcha arcuata Stimpson, 1859 (CCDB 5514). C) Hypoconcha parasitica (Linnaeus, 1763) (CCDB 3608). D) Moreiradromia antillensis (Stimpson, 1859) (CCDB 1). Animals from Brazil, São Paulo state, Ubatuba. Sex: females. Scale bars (mm): A—42; B—9; C—15; D—10. Photographs by R.C. Buranelli.
FIGURE 17. Families Pinnotheridae and Geryonidae. A in Checklist of decapod crustaceans from the coast of the São Paulo state (Brazil) supported by integrative molecular and morphological data: III. Infraorder Brachyura Latreille, 1802
FIGURE 17. Families Pinnotheridae and Geryonidae. A) Austinixa aidae (Righi, 1967) (CCDB 5624). B) Austinixa patagoniensis (Rathbun, 1918) (CCDB 5626). C) Clypeasterophilus stebbingi (Rathbun, 1918) (CCDB 5522). D) Dissodactylus crinitichelis Moreira, 1901 (CCDB 5622). E) Chaceon ramosae Manning, Tavares & Albuquerque, 1989 (CCDB 6166). Animals from Brazil, São Paulo state, Ubatuba. Sex: male (A, B, D), female (C, E). Scale bars (mm): A—5; B—5; C—3; D—3; E—70. Photographs by R.C. Buranelli.
FIGURE 11. Family Epialtidae. A in Checklist of decapod crustaceans from the coast of the São Paulo state (Brazil) supported by integrative molecular and morphological data: III. Infraorder Brachyura Latreille, 1802
FIGURE 11. Family Epialtidae. A) Acanthonyx petiverii H. Milne Edwards, 1834 (CCDB 46). B) Apiomithrax violaceus (A. Milne-Edwards, 1868) (CCDB 5547). C) Epialtus brasiliensis Dana, 1852 (CCDB 5544). D) Leucippa pentagona H. Milne Edwards, 1833 (CCDB 5654). E) Libinia ferreirae Brito Capello, 1871 (CCDB 1540). F) Libinia spinosa H. Milne Edwards in Guérin, 1832 (CCDB 752). G) Stenocionops furcatus (Olivier, 1791) (CCDB 3605). H) Stenocionops spinosissimus (Saussure, 1857) (CCDB 5781). Animals from Brazil, São Paulo state: Ubatuba (A, B, C, D, G), Santos (E), Caraguatatuba (F), RV Soloncy Moura Expedition, Point 8 (H). Sex: male (A, C, E, G), female (B, D, F, H). Scale bars (mm): A—14; B—21; C—9; D—5; E—43; F—72; G—22; H—41. Photographs by R.C. Buranelli.
FIGURE 21. Family Xanthidae. A in Checklist of decapod crustaceans from the coast of the São Paulo state (Brazil) supported by integrative molecular and morphological data: III. Infraorder Brachyura Latreille, 1802
FIGURE 21. Family Xanthidae. A) Cataleptodius floridanus (Fabricius, 1793) (CCDB 5056). B) Paractaea rufopunctata (H. Milne Edwards, 1834) (CCDB 6436). C) Platypodiella spectabilis (Herbst, 1794) (CCDB 4897). D) Speocarcinus dentatus Brandão, Coelho-Filho & Tavares, 2012 (CCDB 5864 E) Speocarcinus meloi D'Incao & Gomes da Silva, 1992 (CCDB 5458). F) Scopolius nuttingi (Rathbun, 1898) (CCDB 5271). Animals from Brazil, São Paulo state, Ubatuba. Sex: male (A–D, F), female (E). Scale bars (mm): A—6; B—4; C—10; D—14; E—10; F—4. Photographs by R.C. Buranelli.
FIGURE 6 in Pachybrachis holerorum (Coleoptera: Chrysomelidae: Cryptocephalinae), a new species from the Apennines, Italy, identified by integration of morphological and molecular data
FIGURE 6. Pachybrachis karamani Weise, lectotype, median lobe of aedeagus, scale bar = 100 µm, magnification 140x. a: dorsal, b: ventral, c: lateral view.
FIGURE 2 in Pachybrachis holerorum (Coleoptera: Chrysomelidae: Cryptocephalinae), a new species from the Apennines, Italy, identified by integration of morphological and molecular data
FIGURE 2. Synthetic cladogram of the P. holerorum Montagna & Sassi diet obtained with Bayesian Inference on rbcL and the trnL(UAA) gene alignments (respectively a and b). Values of Bayesian Posterior Probabilities> 0.5 are reported above the branches.
FIGURE 5 in Pachybrachis holerorum (Coleoptera: Chrysomelidae: Cryptocephalinae), a new species from the Apennines, Italy, identified by integration of morphological and molecular data
FIGURE 5. Pachybrachis holerorum Montagna & Sassi, female rectal apparatus. a: ventral, b: dorsal, c: spermatheca.
FIGURE 4 in Pachybrachis holerorum (Coleoptera: Chrysomelidae: Cryptocephalinae), a new species from the Apennines, Italy, identified by integration of morphological and molecular data
FIGURE 4. Pachybrachis holerorum Montagna & Sassi, holotype, median lobe of aedeagus, scale bar = 100 µm, magnification 130x. a: dorsal, b: ventral, c: lateral view.
FIGURE 1. Cox1 in Pachybrachis holerorum (Coleoptera: Chrysomelidae: Cryptocephalinae), a new species from the Apennines, Italy, identified by integration of morphological and molecular data
FIGURE 1. Cox1 maximum likelihood ultrametric rooted tree obtained by GMYC analysis depicting the seven identified species of Pachybrachis (in red). The outgroup (Cryptocephalus zambanellus) and all branches with 0 length were removed in order to perform the analysis (see Materials and Methods). The vertical blue line depicts the estimated threshold between and within species, with the highest value of maximum likelihood; the vertical black line depicts the lowest value of the identified maximum likelihood confidence interval.
FIGURE 9. a–c in Integration of molecular, bioacoustical and morphological data reveals two new cryptic species of Pelodytes (Anura, Pelodytidae) from the Iberian Peninsula
FIGURE 9. a–c, Mouthparts of preserved tadpoles of three species of Pelodytes. Note the absence of a central gap in the third anterior labial tooth row in P. ibericus. d, mouthpart, and e, lateral view of a living tadpole of P. ibericus from near Jerez de la Frontera.
FIGURE 6 in Integration of molecular, bioacoustical and morphological data reveals two new cryptic species of Pelodytes (Anura, Pelodytidae) from the Iberian Peninsula
FIGURE 6. Morphometric differentiation among the four western Pelodytes lineages. The upper graph is a scatterplot of first and second principal components from a PCA of raw morphometric values in 117 male specimens of Pelodytes. Note that PC1 corresponds mostly to body size (Table 5). The lower graphs are boxplots of SVL, relative tympanum diameter and relative hindlimb length in male Pelodytes, with median (dot), 25% percentiles (box) and ranges, illustrating the smaller body size of P. atlanticus sp. nov. and P. ibericus, and larger tympanum and shorter limbs of P. ibericus. All specimens of P. ibericus, P. atlanticus, and P. hespericus were measured by JDR, and specimens of P. punctatus were measured by MV.
FIGURE 4 in Integration of molecular, bioacoustical and morphological data reveals two new cryptic species of Pelodytes (Anura, Pelodytidae) from the Iberian Peninsula
FIGURE 4. Species tree calculated from the analysis of DNA sequences of two mitochondrial and six nuclear gene segments (left), after exclusion of admixed/hybrid samples identified from the nDNA networks in Fig. 2 and Bayesian assignment analyses in Fig. 3. The tree on the right shows the same topology as recovered in a species tree analysis based only on the six nuclear gene segments.
FIGURE 1 in Integration of molecular, bioacoustical and morphological data reveals two new cryptic species of Pelodytes (Anura, Pelodytidae) from the Iberian Peninsula
FIGURE 1. Location of 45 populations of Pelodytes sampled for molecular analysis (indicative map unscaled). Colored dots represent the four species described: green, lineage A (P. atlanticus sp. nov.); orange, lineage B (P. ibericus); blue, lineage C (P. hespericus sp. nov.); and purple, lineage D (P. punctatus). In some populations (7, 8, 9, 10, 11, 22, 23, 36 and 37) we found evidence for admixture (double-colored dots). Background colors represent the ranges of P. punctatus (blue) and P. ibericus (orange) according to current knowledge (www.iucn.org).
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