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67
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Dataset results
67 results for “hg19”
SpliceAI_rocksdb_hg19_chr3
<p>SpliceAI RocksDB for chromosome 3 of hg19 as used in the AbSplice publication: <a href="https://www.nature.com/articles/s41588-023-01373-3">https://www.nature.com/articles/s41588-023-01373-3</a></p> <p>Precomputed SpliceAI scores for all SNVs and indels up to 4 nucleotides are stored in this database. To use this database for fast computation of SpliceAI predictions see: <a href="https://github.com/gagneurlab/spliceai_rocksdb">https://github.com/gagneurlab/spliceai_rocksdb</a></p> <p>This is also implemented in the AbSplice package: <a href="https://github.com/gagneurlab/absplice">https://github.com/gagneurlab/absplice</a></p> <p>This dataset includes SpliceAI scores. The scores are free for academic and not-for-profit use; other use requires a commercial license from Illumina, Inc., see the GitHub repository of SpliceAI: <a href="https://github.com/Illumina/SpliceAI/tree/master">https://github.com/Illumina/SpliceAI/tree/master</a></p>
SpliceAI_rocksdb_hg19_chr7
<p>SpliceAI RocksDB for chromosome 7 of hg19 as used in the AbSplice publication: <a href="https://www.nature.com/articles/s41588-023-01373-3">https://www.nature.com/articles/s41588-023-01373-3</a></p> <p>Precomputed SpliceAI scores for all SNVs and indels up to 4 nucleotides are stored in this database. To use this database for fast computation of SpliceAI predictions see: <a href="https://github.com/gagneurlab/spliceai_rocksdb">https://github.com/gagneurlab/spliceai_rocksdb</a></p> <p>This is also implemented in the AbSplice package: <a href="https://github.com/gagneurlab/absplice">https://github.com/gagneurlab/absplice</a></p> <p>This dataset includes SpliceAI scores. The scores are free for academic and not-for-profit use; other use requires a commercial license from Illumina, Inc., see the GitHub repository of SpliceAI: <a href="https://github.com/Illumina/SpliceAI/tree/master">https://github.com/Illumina/SpliceAI/tree/master</a></p>
SpliceAI_rocksdb_hg19_chr17
<p>SpliceAI RocksDB for chromosome 17 of hg19 as used in the AbSplice publication: <a href="https://www.nature.com/articles/s41588-023-01373-3">https://www.nature.com/articles/s41588-023-01373-3</a></p> <p>Precomputed SpliceAI scores for all SNVs and indels up to 4 nucleotides are stored in this database. To use this database for fast computation of SpliceAI predictions see: <a href="https://github.com/gagneurlab/spliceai_rocksdb">https://github.com/gagneurlab/spliceai_rocksdb</a></p> <p>This is also implemented in the AbSplice package: <a href="https://github.com/gagneurlab/absplice">https://github.com/gagneurlab/absplice</a></p> <p>This dataset includes SpliceAI scores. The scores are free for academic and not-for-profit use; other use requires a commercial license from Illumina, Inc., see the GitHub repository of SpliceAI: <a href="https://github.com/Illumina/SpliceAI/tree/master">https://github.com/Illumina/SpliceAI/tree/master</a></p>
SpliceAI_rocksdb_hg19_chr20
<p>SpliceAI RocksDB for chromosome 20 of hg19 as used in the AbSplice publication: <a href="https://www.nature.com/articles/s41588-023-01373-3">https://www.nature.com/articles/s41588-023-01373-3</a></p> <p>Precomputed SpliceAI scores for all SNVs and indels up to 4 nucleotides are stored in this database. To use this database for fast computation of SpliceAI predictions see: <a href="https://github.com/gagneurlab/spliceai_rocksdb">https://github.com/gagneurlab/spliceai_rocksdb</a></p> <p>This is also implemented in the AbSplice package: <a href="https://github.com/gagneurlab/absplice">https://github.com/gagneurlab/absplice</a></p> <p>This dataset includes SpliceAI scores. The scores are free for academic and not-for-profit use; other use requires a commercial license from Illumina, Inc., see the GitHub repository of SpliceAI: <a href="https://github.com/Illumina/SpliceAI/tree/master">https://github.com/Illumina/SpliceAI/tree/master</a></p>
SpliceAI_rocksdb_hg19_chr22
<p>SpliceAI RocksDB for chromosome 22 of hg19 as used in the AbSplice publication: <a href="https://www.nature.com/articles/s41588-023-01373-3">https://www.nature.com/articles/s41588-023-01373-3</a></p> <p>Precomputed SpliceAI scores for all SNVs and indels up to 4 nucleotides are stored in this database. To use this database for fast computation of SpliceAI predictions see: <a href="https://github.com/gagneurlab/spliceai_rocksdb">https://github.com/gagneurlab/spliceai_rocksdb</a></p> <p>This is also implemented in the AbSplice package: <a href="https://github.com/gagneurlab/absplice">https://github.com/gagneurlab/absplice</a></p> <p>This dataset includes SpliceAI scores. The scores are free for academic and not-for-profit use; other use requires a commercial license from Illumina, Inc., see the GitHub repository of SpliceAI: <a href="https://github.com/Illumina/SpliceAI/tree/master">https://github.com/Illumina/SpliceAI/tree/master</a></p>
SpliceAI_rocksdb_hg19_chr13
<p>SpliceAI RocksDB for chromosome 13 of hg19 as used in the AbSplice publication: <a href="https://www.nature.com/articles/s41588-023-01373-3">https://www.nature.com/articles/s41588-023-01373-3</a></p> <p>Precomputed SpliceAI scores for all SNVs and indels up to 4 nucleotides are stored in this database. To use this database for fast computation of SpliceAI predictions see: <a href="https://github.com/gagneurlab/spliceai_rocksdb">https://github.com/gagneurlab/spliceai_rocksdb</a></p> <p>This is also implemented in the AbSplice package: <a href="https://github.com/gagneurlab/absplice">https://github.com/gagneurlab/absplice</a></p> <p>This dataset includes SpliceAI scores. The scores are free for academic and not-for-profit use; other use requires a commercial license from Illumina, Inc., see the GitHub repository of SpliceAI: <a href="https://github.com/Illumina/SpliceAI/tree/master">https://github.com/Illumina/SpliceAI/tree/master</a></p>
SpliceAI_rocksdb_hg19_chr12
<p>SpliceAI RocksDB for chromosome 12 of hg19 as used in the AbSplice publication: <a href="https://www.nature.com/articles/s41588-023-01373-3">https://www.nature.com/articles/s41588-023-01373-3</a></p> <p>Precomputed SpliceAI scores for all SNVs and indels up to 4 nucleotides are stored in this database. To use this database for fast computation of SpliceAI predictions see: <a href="https://github.com/gagneurlab/spliceai_rocksdb">https://github.com/gagneurlab/spliceai_rocksdb</a></p> <p>This is also implemented in the AbSplice package: <a href="https://github.com/gagneurlab/absplice">https://github.com/gagneurlab/absplice</a></p> <p>This dataset includes SpliceAI scores. The scores are free for academic and not-for-profit use; other use requires a commercial license from Illumina, Inc., see the GitHub repository of SpliceAI: <a href="https://github.com/Illumina/SpliceAI/tree/master">https://github.com/Illumina/SpliceAI/tree/master</a></p>
SpliceAI_rocksdb_hg19_chr14
<p>SpliceAI RocksDB for chromosome 14 of hg19 as used in the AbSplice publication: <a href="https://www.nature.com/articles/s41588-023-01373-3">https://www.nature.com/articles/s41588-023-01373-3</a></p> <p>Precomputed SpliceAI scores for all SNVs and indels up to 4 nucleotides are stored in this database. To use this database for fast computation of SpliceAI predictions see: <a href="https://github.com/gagneurlab/spliceai_rocksdb">https://github.com/gagneurlab/spliceai_rocksdb</a></p> <p>This is also implemented in the AbSplice package: <a href="https://github.com/gagneurlab/absplice">https://github.com/gagneurlab/absplice</a></p> <p>This dataset includes SpliceAI scores. The scores are free for academic and not-for-profit use; other use requires a commercial license from Illumina, Inc., see the GitHub repository of SpliceAI: <a href="https://github.com/Illumina/SpliceAI/tree/master">https://github.com/Illumina/SpliceAI/tree/master</a></p>
SpliceAI_rocksdb_hg19_chrY
<p>SpliceAI RocksDB for chromosome Y of hg19 as used in the AbSplice publication: <a href="https://www.nature.com/articles/s41588-023-01373-3">https://www.nature.com/articles/s41588-023-01373-3</a></p> <p>Precomputed SpliceAI scores for all SNVs and indels up to 4 nucleotides are stored in this database. To use this database for fast computation of SpliceAI predictions see: <a href="https://github.com/gagneurlab/spliceai_rocksdb">https://github.com/gagneurlab/spliceai_rocksdb</a></p> <p>This is also implemented in the AbSplice package: <a href="https://github.com/gagneurlab/absplice">https://github.com/gagneurlab/absplice</a></p> <p>This dataset includes SpliceAI scores. The scores are free for academic and not-for-profit use; other use requires a commercial license from Illumina, Inc., see the GitHub repository of SpliceAI: <a href="https://github.com/Illumina/SpliceAI/tree/master">https://github.com/Illumina/SpliceAI/tree/master</a></p>
SpliceAI_rocksdb_hg19_chr15
<p>SpliceAI RocksDB for chromosome 15 of hg19 as used in the AbSplice publication: <a href="https://www.nature.com/articles/s41588-023-01373-3">https://www.nature.com/articles/s41588-023-01373-3</a></p> <p>Precomputed SpliceAI scores for all SNVs and indels up to 4 nucleotides are stored in this database. To use this database for fast computation of SpliceAI predictions see: <a href="https://github.com/gagneurlab/spliceai_rocksdb">https://github.com/gagneurlab/spliceai_rocksdb</a></p> <p>This is also implemented in the AbSplice package: <a href="https://github.com/gagneurlab/absplice">https://github.com/gagneurlab/absplice</a></p> <p>This dataset includes SpliceAI scores. The scores are free for academic and not-for-profit use; other use requires a commercial license from Illumina, Inc., see the GitHub repository of SpliceAI: <a href="https://github.com/Illumina/SpliceAI/tree/master">https://github.com/Illumina/SpliceAI/tree/master</a></p>
SpliceAI_rocksdb_hg19_chr21
<p>SpliceAI RocksDB for chromosome 21 of hg19 as used in the AbSplice publication: <a href="https://www.nature.com/articles/s41588-023-01373-3">https://www.nature.com/articles/s41588-023-01373-3</a></p> <p>Precomputed SpliceAI scores for all SNVs and indels up to 4 nucleotides are stored in this database. To use this database for fast computation of SpliceAI predictions see: <a href="https://github.com/gagneurlab/spliceai_rocksdb">https://github.com/gagneurlab/spliceai_rocksdb</a></p> <p>This is also implemented in the AbSplice package: <a href="https://github.com/gagneurlab/absplice">https://github.com/gagneurlab/absplice</a></p> <p>This dataset includes SpliceAI scores. The scores are free for academic and not-for-profit use; other use requires a commercial license from Illumina, Inc., see the GitHub repository of SpliceAI: <a href="https://github.com/Illumina/SpliceAI/tree/master">https://github.com/Illumina/SpliceAI/tree/master</a></p>
SpliceAI_rocksdb_hg19_chr11
<p>SpliceAI RocksDB for chromosome 11 of hg19 as used in the AbSplice publication: <a href="https://www.nature.com/articles/s41588-023-01373-3">https://www.nature.com/articles/s41588-023-01373-3</a></p> <p>Precomputed SpliceAI scores for all SNVs and indels up to 4 nucleotides are stored in this database. To use this database for fast computation of SpliceAI predictions see: <a href="https://github.com/gagneurlab/spliceai_rocksdb">https://github.com/gagneurlab/spliceai_rocksdb</a></p> <p>This is also implemented in the AbSplice package: <a href="https://github.com/gagneurlab/absplice">https://github.com/gagneurlab/absplice</a></p> <p>This dataset includes SpliceAI scores. The scores are free for academic and not-for-profit use; other use requires a commercial license from Illumina, Inc., see the GitHub repository of SpliceAI: <a href="https://github.com/Illumina/SpliceAI/tree/master">https://github.com/Illumina/SpliceAI/tree/master</a></p>
SpliceAI_rocksdb_hg19_chrX
<p>SpliceAI RocksDB for chromosome X of hg19 as used in the AbSplice publication: <a href="https://www.nature.com/articles/s41588-023-01373-3">https://www.nature.com/articles/s41588-023-01373-3</a></p> <p>Precomputed SpliceAI scores for all SNVs and indels up to 4 nucleotides are stored in this database. To use this database for fast computation of SpliceAI predictions see: <a href="https://github.com/gagneurlab/spliceai_rocksdb">https://github.com/gagneurlab/spliceai_rocksdb</a></p> <p>This is also implemented in the AbSplice package: <a href="https://github.com/gagneurlab/absplice">https://github.com/gagneurlab/absplice</a></p> <p>This dataset includes SpliceAI scores. The scores are free for academic and not-for-profit use; other use requires a commercial license from Illumina, Inc., see the GitHub repository of SpliceAI: <a href="https://github.com/Illumina/SpliceAI/tree/master">https://github.com/Illumina/SpliceAI/tree/master</a></p>
SpliceAI_rocksdb_hg19_chr19
<p>SpliceAI RocksDB for chromosome 19 of hg19 as used in the AbSplice publication: <a href="https://www.nature.com/articles/s41588-023-01373-3">https://www.nature.com/articles/s41588-023-01373-3</a></p> <p>Precomputed SpliceAI scores for all SNVs and indels up to 4 nucleotides are stored in this database. To use this database for fast computation of SpliceAI predictions see: <a href="https://github.com/gagneurlab/spliceai_rocksdb">https://github.com/gagneurlab/spliceai_rocksdb</a></p> <p>This is also implemented in the AbSplice package: <a href="https://github.com/gagneurlab/absplice">https://github.com/gagneurlab/absplice</a></p> <p>This dataset includes SpliceAI scores. The scores are free for academic and not-for-profit use; other use requires a commercial license from Illumina, Inc., see the GitHub repository of SpliceAI: <a href="https://github.com/Illumina/SpliceAI/tree/master">https://github.com/Illumina/SpliceAI/tree/master</a></p>
SpliceAI_rocksdb_hg19_chr16
<p>SpliceAI RocksDB for chromosome 16 of hg19 as used in the AbSplice publication: <a href="https://www.nature.com/articles/s41588-023-01373-3">https://www.nature.com/articles/s41588-023-01373-3</a></p> <p>Precomputed SpliceAI scores for all SNVs and indels up to 4 nucleotides are stored in this database. To use this database for fast computation of SpliceAI predictions see: <a href="https://github.com/gagneurlab/spliceai_rocksdb">https://github.com/gagneurlab/spliceai_rocksdb</a></p> <p>This is also implemented in the AbSplice package: <a href="https://github.com/gagneurlab/absplice">https://github.com/gagneurlab/absplice</a></p> <p>This dataset includes SpliceAI scores. The scores are free for academic and not-for-profit use; other use requires a commercial license from Illumina, Inc., see the GitHub repository of SpliceAI: <a href="https://github.com/Illumina/SpliceAI/tree/master">https://github.com/Illumina/SpliceAI/tree/master</a></p>
SpliceAI_rocksdb_hg19_chr10
<p>SpliceAI RocksDB for chromosome 10 of hg19 as used in the AbSplice publication: <a href="https://www.nature.com/articles/s41588-023-01373-3">https://www.nature.com/articles/s41588-023-01373-3</a></p> <p>Precomputed SpliceAI scores for all SNVs and indels up to 4 nucleotides are stored in this database. To use this database for fast computation of SpliceAI predictions see: <a href="https://github.com/gagneurlab/spliceai_rocksdb">https://github.com/gagneurlab/spliceai_rocksdb</a></p> <p>This is also implemented in the AbSplice package: <a href="https://github.com/gagneurlab/absplice">https://github.com/gagneurlab/absplice</a></p> <p>This dataset includes SpliceAI scores. The scores are free for academic and not-for-profit use; other use requires a commercial license from Illumina, Inc., see the GitHub repository of SpliceAI: <a href="https://github.com/Illumina/SpliceAI/tree/master">https://github.com/Illumina/SpliceAI/tree/master</a></p>
SpliceAI_rocksdb_hg19_chr8
<p>SpliceAI RocksDB for chromosome 8 of hg19 as used in the AbSplice publication: <a href="https://www.nature.com/articles/s41588-023-01373-3">https://www.nature.com/articles/s41588-023-01373-3</a></p> <p>Precomputed SpliceAI scores for all SNVs and indels up to 4 nucleotides are stored in this database. To use this database for fast computation of SpliceAI predictions see: <a href="https://github.com/gagneurlab/spliceai_rocksdb">https://github.com/gagneurlab/spliceai_rocksdb</a></p> <p>This is also implemented in the AbSplice package: <a href="https://github.com/gagneurlab/absplice">https://github.com/gagneurlab/absplice</a></p> <p>This dataset includes SpliceAI scores. The scores are free for academic and not-for-profit use; other use requires a commercial license from Illumina, Inc., see the GitHub repository of SpliceAI: <a href="https://github.com/Illumina/SpliceAI/tree/master">https://github.com/Illumina/SpliceAI/tree/master</a></p>
SpliceAI_rocksdb_hg19_chr9
<p>SpliceAI RocksDB for chromosome 9 of hg19 as used in the AbSplice publication: <a href="https://www.nature.com/articles/s41588-023-01373-3">https://www.nature.com/articles/s41588-023-01373-3</a></p> <p>Precomputed SpliceAI scores for all SNVs and indels up to 4 nucleotides are stored in this database. To use this database for fast computation of SpliceAI predictions see: <a href="https://github.com/gagneurlab/spliceai_rocksdb">https://github.com/gagneurlab/spliceai_rocksdb</a></p> <p>This is also implemented in the AbSplice package: <a href="https://github.com/gagneurlab/absplice">https://github.com/gagneurlab/absplice</a></p> <p>This dataset includes SpliceAI scores. The scores are free for academic and not-for-profit use; other use requires a commercial license from Illumina, Inc., see the GitHub repository of SpliceAI: <a href="https://github.com/Illumina/SpliceAI/tree/master">https://github.com/Illumina/SpliceAI/tree/master</a></p>
SpliceAI_rocksdb_hg19_chr18
<p>SpliceAI RocksDB for chromosome 18 of hg19 as used in the AbSplice publication: <a href="https://www.nature.com/articles/s41588-023-01373-3">https://www.nature.com/articles/s41588-023-01373-3</a></p> <p>Precomputed SpliceAI scores for all SNVs and indels up to 4 nucleotides are stored in this database. To use this database for fast computation of SpliceAI predictions see: <a href="https://github.com/gagneurlab/spliceai_rocksdb">https://github.com/gagneurlab/spliceai_rocksdb</a></p> <p>This is also implemented in the AbSplice package: <a href="https://github.com/gagneurlab/absplice">https://github.com/gagneurlab/absplice</a></p> <p>This dataset includes SpliceAI scores. The scores are free for academic and not-for-profit use; other use requires a commercial license from Illumina, Inc., see the GitHub repository of SpliceAI: <a href="https://github.com/Illumina/SpliceAI/tree/master">https://github.com/Illumina/SpliceAI/tree/master</a></p>
Matrix N, TEs vs promoters, weighted with L = 2.5e5kb, hg19
<p>Regulatory susceptibility matrix N, with rows as hg19 protein coding genes and columns as TE subfamilies. For any given gene, regulatory TEs are strictly out of any promoter and any exon belonging to that gene. The contribution of each single TE is weighted by a gaussian kernel centered on the closest promoter of that gene, with a bandwidth L = 2.5e5kb</p>
ScienceDex guides
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