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Genome-wide haplotype counting in diatoms S. robusta and P. tricornutum - processed datasets
<p><strong>Datasets used for genome-wide haplotype counting in <em>S. robusta</em> and <em>P. tricornutum</em> next-generation sequencing data.</strong></p> <p>For <em>S. robusta</em> and <em>P. tricornutum </em>genome-wide haplotype counting, reliable SNPs set was first identified in ILLUMINA short-read sequencing datasets and then used for counting of the number of haplotypes in the PacBio RS II and MinION long reads. The ILLUMINA and PacBio data of <em>S. robusta</em> were downloaded from <a href="https://www.ebi.ac.uk/ena/browser/view/PRJEB36614">https://www.ebi.ac.uk/ena/browser/view/PRJEB36614</a> and ILLUMINA and Minion data of <em>P. tricornutum</em> were downloaded from <a href="https://www.ebi.ac.uk/ena/browser/view/PRJNA487263">https://www.ebi.ac.uk/ena/browser/view/PRJNA487263</a>.</p> <p>Reference genome assembly for<em> S. robusta</em>: CAICTM010000001-CAICTM010004752 (European Nucleotide Archive) and</p> <p>Reference genome assembly for<em> P. tricornutum</em>: GCA_000150955.2 (European Nucleotide Archive).</p> <p>Uploaded files: </p> <p>-.bam files containing S. robusta PacBio self-corrected CCS reads aligned to reference and processed and P. tricornutum self-corrected MinION reads aligned to reference and processed: </p> <p><em>S_robusta_aligned_corrected_PacBio_reads.bam</em></p> <p><em>P_tricornutum_aligned_corrected_MinION_reads.bam</em></p> <p>-.table files with selected reliable SNPs used for haplotype counting with CHROM, POSITION, REFERENCE and ALTERNATIVE allele </p> <p><em>S_robusta_SNPs.table</em></p> <p><em>P_tricornutum_SNPs.table</em></p> <p> </p>
Figure 2. Selected 1H-1H in Schizanthines N, O, and P, Tropane Alkaloids from the Aerial Parts ofSchizanthus tricolor
Figure 2. Selected 1H-1H COSY (dashed arrows) and 1H-13C HMBC (full arrows) correlations observed for compounds 1, 2, and 3.
Graph of phase shift $\Delta P_0$ vs extropic non-extensive parameter $q$
<p>Graph of phase shift $\Delta P_0$ vs extropic non-extensive parameter $q$, taking rest of parameters as $\varepsilon =0.1$, $\phi _m=1$, $\alpha =3.5 $, $\mu =0.56$ and $\nu=0.44$. The upper curve for $\beta =0.1$ (red line), middle one for $\beta=0.5$ (green line) and lower one is $\beta= 0.95 $ (blue line).</p>
Data used for the paper Andres Parra-Puerto, Kai Ling NG, Kieran Fahy, Angela E Goode, Mary P. Ryan, and Anthony Kucernak Supported Transition Metal Phosphides: Activity Survey for HER, ORR, OER and Corrosion Resistance in Acid and Alkaline Electrolytes ACS Catalysis, 2019 DOI: 10.1021/acscatal.9b03359
<p>This is an updated version of the spreadsheet which corrects the first version which had the wrong datasets provided for figure 2 c and d (ORR) </p> <p> </p> <p>The data in this spreadsheet was used to produce the figures in the paper</p> <p>Andres Parra-Puerto, Kai Ling NG, Kieran Fahy, Angela E Goode, Mary P. Ryan, and Anthony Kucernak</p> <p>Supported Transition Metal Phosphides: Activity Survey for HER, ORR, OER and Corrosion Resistance in Acid and Alkaline Electrolytes</p> <p>ACS Catalysis, 2019</p> <p>DOI: 10.1021/acscatal.9b03359Please cite the above reference if you wish to use this data</p>
Supplementary material 1 from: Brundu G, Pauchard A, Pyšek P, Pergl J, Bindewald AM, Brunori A, Canavan S, Campagnaro T, Celesti-Grapow L, Dechoum M de S, Dufour-Dror J-M, Essl F, Flory SL, Genovesi P, Guarino F, Guangzhe L, Hulme PE, Jäger H, Kettle CJ, Krumm F, Langdon B, Lapin K, Lozano V, Le Roux JJ, Novoa A, Nuñez MA, Porté AJ, Silva JS, Schaffner U, Sitzia T, Tanner R, Tshidada N, Vítková M, Westergren M, Wilson JRU, Richardson DM (2020) Global guidelines for the sustainable use of non-native trees to prevent tree invasions and mitigate their negative impacts. NeoBiota 61: 65-116. https://doi.org/10.3897/neobiota.61.58380
Global guidelines for the sustainable use of non-native trees to prevent tree invasions and mitigate their negative impacts (GG-NNTs) Background information (Annex to the GG-NNTs)
Supplementary material 3 from: Valuyskikh OE, Teteryuk LV, Pylina YI, Sushentsov OE, Martynenko NA, Shadrin DM (2020) Phylogenetic relationships and status of taxa of Pulsatilla uralensis and P. patens s.str. (Ranunculaceae) in north-eastern European Russia. PhytoKeys 162: 113-130. https://doi.org/10.3897/phytokeys.162.53361
Likelihood and Bayesian Inference phylogenetic tree (matK) of 13 sequences of P. patens s.str. and 16 sequences of P. uralensis
Supplementary material 4 from: Valuyskikh OE, Teteryuk LV, Pylina YI, Sushentsov OE, Martynenko NA, Shadrin DM (2020) Phylogenetic relationships and status of taxa of Pulsatilla uralensis and P. patens s.str. (Ranunculaceae) in north-eastern European Russia. PhytoKeys 162: 113-130. https://doi.org/10.3897/phytokeys.162.53361
Phylogenetic tree (ITS2) constructed using the Maximum Likelihood and Bayesian Inference of the 13 sequences of P. patens s.str. and 15 sequences of P. uralensis
Supplementary material (individual data set): Egeler, G.-A. & Baur, P. (2020). Menüwahl in der Hochschulmensa: Fleisch oder Vegi? Ergebnisse eines 12-wöchigen Feldexperiments (NOVANIMAL Working Paper No. 5). ZHAW. https://doi.org/10.21256/zhaw-1405
<p><strong>Meal choice at two university canteens in a field experiment during 12 weeks: anonymised individual menu sales data</strong></p> <p>How do canteen visitors respond to a revised offer of meat-based and plant-based meals? Selected innovations were simultaneously implemented and tested in a trans­disciplinary field experiment in two university canteens over a 12-week period in the autumn semester 2017. Throughout this time, the meat dishes and ‘veg-meals’ (ovo-lacto-vegetarian and vegan meals) were randomly distributed among the three menu lines, the veg-meals were not marketed and advertised as such and the previous vegetarian menu line was abolished. Weeks where the usual number of meat dishes were on offer (the ‘base weeks’) alternated with weeks where the share of veg-meals was increased (the ‘intervention weeks’). </p> <p>The field experiment did not have a negative impact on the number of meals sold or the turnover compared to the two previous years. Women choose meat dishes less often than men. This connection applies in the base weeks and intervention weeks, in all age groups, among both students and among staff. Remarkably, the share of (non-labelled) vegan dishes is comparable for women and men over all age groups, independent of university affiliation (student, staff). Authentic vegan dishes were particularly welcome. Veg-meals could also be sold on the more expensive menu line. There was a better correlation between meal choice, eating habits and attitudes (health, environment, animal welfare, social aspects) than expected. </p> <p><strong>The dataset the dataset contains over <em>21'000</em> anonymised individual menu sales. The analyses and results are summarized in the working paper No. 5 <a href="https://doi.org/10.21256/zhaw-1405">https://doi.org/10.21256/zhaw-1405</a></strong></p> <p>The corresponding scripts are: </p> <p>- <a href="http://doi.org/10.5281/zenodo.4034686">10.5281/zenodo.4034686</a></p> <p>- <a href="http://doi.org/10.5281/zenodo.4034698">10.5281/zenodo.4034698</a></p> <p>- <a href="http://doi.org/10.5281/zenodo.4244258">10.5281/zenodo.4244258</a> (newer Version)</p> <p>For more information visit the <a href="http://novanimal.ch">novanimal.ch</a> website.</p>
Seismic Velocity Model of P- and S-waves for the Italian Lithosphere
<p>P- and S- seismic waves 3D velocity model of the Italian Lithosphere obtained by linearized seismic local earthquake tomography (LET) method by <a href="https://agupubs.onlinelibrary.wiley.com/doi/abs/10.1029/92JB00603">Zhao et al., 1992</a>.</p> <p>The inversion for the model parameters is performed using a combination of pseudo-bending and Snell's Law for ray tracing on a 3D grid of nodes on spherical coordinates and the LSQR algorithm by <a href="https://dl.acm.org/doi/10.1145/355984.355989">Page and Saunders, 1982</a>. The method allows to model first order seismic discontinuities like the Moho, for which the Moho for the Italian region by <a href="https://agupubs.onlinelibrary.wiley.com/doi/abs/10.1029/2011GC003649">Di Stefano et al., 2011</a>.</p> <p>A previous version of the same tomographic inversion was produced and discussed in <a href="https://www.sciencedirect.com/science/article/abs/pii/S0264370714001306?via%3Dihub">Di Stefano and Ciaccio, 2014</a> but not released in digital file format.</p> <p>The present file is an updated version of the model by <a href="https://www.sciencedirect.com/science/article/abs/pii/S0264370714001306?via%3Dihub">Di Stefano and Ciaccio, 2014</a>, based on a slightly different gridding but with the same P- and S- travel-times and earthquakes locations dataset.</p> <p>The model is here released in csv, pipe (|) separated, file.</p> <p><strong>Header Explanation</strong></p> <ul> <li><strong>lon</strong>: longitude in decimal degrees positive eastward from Greenwich</li> <li><strong>lat</strong>: latitude in decimal degrees positive northward</li> <li><strong>depth</strong>: depth in km positive downward</li> <li><strong>type</strong>: type of model parameter (vp= P-wave velocity; vs= S-wave velocity)</li> <li><strong>value</strong>: seismic velocity value</li> <li><strong>units</strong>: units measure of the velocity value</li> </ul> <p>The external bounding box of the model is:</p> <ul> <li>Minimum Longitude = 5°E</li> <li>Maximum Longitude = 20°E</li> <li>Minimum Latitude = 36°N</li> <li>Maximum Latitude = 48°N</li> <li>Minumum Depth = 0 km</li> <li>Maximum Depth = 80 km</li> </ul> <p>Lines 2 to 43093 report the Vp model</p> <p>Lines 43094 to 86185 report the Vs model</p>
FIGURES 30–39. Pseudosympycnus Robinson. Head. 30–32. P in Review of the Neotropical genus Pseudosympycnus (Diptera: Dolichopodidae) with description of six new species from Brazil and Peru
FIGURES 30–39. Pseudosympycnus Robinson. Head. 30–32. P. palpiger (Van Duzee, 1931). 30–31. Paratype Ƌ. 30. Anterior view. 31. Lateral view. 32. Paratype ♀, anterior view. 33–35. P. perornatus Robinson, 1967. 33–34. Paratype Ƌ. 33. Anterior view. 34. Lateral view. 35. Paratype ♀, anterior view; 36–37. P. robinsoni sp. nov., holotype Ƌ. 36. Anterior view. 37. Lateral view; 38–39. P. sehnali sp. nov., holotype Ƌ. 38. Anterior view. 39. Lateral view. Scale bars = 0.2 mm.
FIGURES 55–65. Pseudosympycnus Robinson. Male tarsus I and III. 55–57 P in Review of the Neotropical genus Pseudosympycnus (Diptera: Dolichopodidae) with description of six new species from Brazil and Peru
FIGURES 55–65. Pseudosympycnus Robinson. Male tarsus I and III. 55–57 P. palpiger (Van Duzee, 1931). 55, 57. Paratype Ƌ. 55. Tarsus I. 57. Tarsus III. 56. Identified specimen from Acre, Brazil, tarsus I. 58–59. P. perornatus Robinson, 1967, paratype Ƌ. 58. Tarsus I. 59. Tarsus III; 60–61. P. robinsoni sp. nov., holotype Ƌ. 60. Tarsus I. 61. Tarsus III; 62–63. P. sehnali sp. nov., holotype Ƌ. 62. Tarsus I. 63. Tarsus III; 64–65. P. singularis (Parent, 1934), syntype Ƌ (photo: Erica McAlister). 64. Tarsus I. 65. Tarsus III. Scale bars = 0.2 mm.
FIGURES 7–11. Pseudosympycnus Robinson. Habitus. 7. P in Review of the Neotropical genus Pseudosympycnus (Diptera: Dolichopodidae) with description of six new species from Brazil and Peru
FIGURES 7–11. Pseudosympycnus Robinson. Habitus. 7. P. palpiger (Van Duzee, 1931), paratype Ƌ; 8. P. perornatus Robinson, 1967, paratype Ƌ; 9. P. robinsoni sp. nov., holotype Ƌ; 10. P. sehnali sp. nov., holotype Ƌ; 11. P. singularis (Parent, 1934), syntype Ƌ (photo: Erica McAlister). Scale bars = 1 mm.
FIGURES 85–88 in New or rare Madagascar tiger beetles-18. Pogonostoma (Pogonostoma) ondravybirali sp. nov., elaborated redescriptions of P. (P.) atrorotundatum, P. (P.) densisculptum and P. (Microstenocera) fabiocassolai (Coleoptera: Cicindelidae)
FIGURES 85–88. Pogonostoma (Microstenocera) fabiocassolai Moravec. 85–87—habitus: 85—♁, 5.45 mm, Sandranantitra, HT (FCCR); 86—♁, 5.6 mm, Andasibe-Perinet (CJVB); 87—♀, ibid. (CJVB); 88—male aedeagus, ibid. (CJVB). Bars = 1 mm.
FIGURES 1–6. Pseudosympycnus Robinson. Habitus. 1. P in Review of the Neotropical genus Pseudosympycnus (Diptera: Dolichopodidae) with description of six new species from Brazil and Peru
FIGURES 1–6. Pseudosympycnus Robinson. Habitus. 1. P. albipalpus (Parent, 1930), syntype Ƌ (photo: Günther Wöss); 2. P. araza sp. nov., holotype Ƌ; 3. P. bickeli sp. nov., holotype Ƌ; 4. P. latipes (Parent, 1930), syntype Ƌ (photo: Günther Wöss); 5. P. latitibia sp. nov., paratype Ƌ; 6. P. maroaga sp. nov., holotype Ƌ. Scale bars = 1 mm.
FIGURES 89–103 in New or rare Madagascar tiger beetles-18. Pogonostoma (Pogonostoma) ondravybirali sp. nov., elaborated redescriptions of P. (P.) atrorotundatum, P. (P.) densisculptum and P. (Microstenocera) fabiocassolai (Coleoptera: Cicindelidae)
FIGURES 89–103. Pogonostoma (M.) fabiocassolai Moravec. 89–90—elytral apices: 89—♁, Andasibe-Perinet (CJVB); 90—♀, ibid.; 91–92—elytron: 91—♁, ibid.; 92—♀, ibid.; 93—head, ♀, ibid. 94–95—mandibles: 94—♀, ibid.; 95—♁, ibid.; 96–99—pronotum: 96—♁, Sandranantitra, HT (FCCR); 97–98—♁, Andasibe-Perinet (CJVB); 99—♀, ibid.; 100–103—la- brum: 100–102—♁, ibid.; 103——♀, ibid. Bars = 1 mm.
FIGURES 104–107 in New or rare Madagascar tiger beetles-18. Pogonostoma (Pogonostoma) ondravybirali sp. nov., elaborated redescriptions of P. (P.) atrorotundatum, P. (P.) densisculptum and P. (Microstenocera) fabiocassolai (Coleoptera: Cicindelidae)
FIGURES 104–107. Maps of distribution. 104—Pogonostoma (Pogonostoma) ondravybirali sp. nov.; 105—Pogonostoma (P.) atrorotundatum W. Horn; 106—Pogonostoma (P.) densisculptum Moravec; 107—Pogonostoma (Microstenocera) fabiocassolai Moravec.
FIGURES 73–79 in New or rare Madagascar tiger beetles-18. Pogonostoma (Pogonostoma) ondravybirali sp. nov., elaborated redescriptions of P. (P.) atrorotundatum, P. (P.) densisculptum and P. (Microstenocera) fabiocassolai (Coleoptera: Cicindelidae)
FIGURES 73–79. Pogonostoma (P.) densisculptum Moravec. 73–74—elytral apices: 73—♁, Ambohitantely (CCJM); 74—♀, 10.7 mm, Manankazo, HT (temporarily in CCJM); 75–76—elytron: 75—♁, Ambohitantely (CCJM); 76—♀, HT; 77—ae- deagus, ibid.; 78—the same aedeagus without parameres; 79—ditto, ventral view. Bars = 1 mm.
FIGURES 50–54 in New or rare Madagascar tiger beetles-18. Pogonostoma (Pogonostoma) ondravybirali sp. nov., elaborated redescriptions of P. (P.) atrorotundatum, P. (P.) densisculptum and P. (Microstenocera) fabiocassolai (Coleoptera: Cicindelidae)
FIGURES 50–54. Pogonostoma (P.) atrorotundatum W. Horn, pronotum. 50—♁, "C. W. Madagascar", LT (SDEI); 51—♁, ibid., PLT (SDEI); 52—♁, Antsalova (CCJM ex APCA); 53—♁, Bongolava, HT of syn. P. (P.) rufidens Rivalier (MNHN); 54—♀, Antsalova (CCJM). Bars = 1 mm.
FIGURES 21–29 in New or rare Madagascar tiger beetles-18. Pogonostoma (Pogonostoma) ondravybirali sp. nov., elaborated redescriptions of P. (P.) atrorotundatum, P. (P.) densisculptum and P. (Microstenocera) fabiocassolai (Coleoptera: Cicindelidae)
FIGURES 21–29. Pogonostoma (P.) ondravybirali sp. nov. (from type locality), male aedeagus or its apex. 21—HT (SDEI); 22—ditto, ventral view; 23—PT (CJVB); 24—ditto, dorsal view; 25—ditto, ventral view; 26—PT (CCJM); 27—ditto, ventral view; 28—PT (CJVB); 29—ditto, ventral view. Bar = 1 mm.
FIGURES 72–73. Pseudosympycnus Robinson. Mesonotum, dorsal view. 72. P in Review of the Neotropical genus Pseudosympycnus (Diptera: Dolichopodidae) with description of six new species from Brazil and Peru
FIGURES 72–73. Pseudosympycnus Robinson. Mesonotum, dorsal view. 72. P. latitibia sp. nov., paratype Ƌ; 73. P. perornatus Robinson, 1967, paratype Ƌ. Scale bars = 0.2 mm.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.