From any microscope to analysis‑ready
Automatic tile stitching, format conversion, and image preprocessing — 150+ microscope formats in, clean analysis-ready data out. In minutes, not hours.
Every Microscope. One Pipeline.
ConductPrep reads natively from every major vendor. Click a card to see supported formats and auto-actions.
Import → Align → Enhance → Scale
Four stages from raw acquisition to analysis-ready data.
Import
- 150+ formats via Bio-Formats
- Auto-metadata extraction
- Channel splitting & series detection
- Batch import from folders
- Headless CLI mode
- Watch-folder automation
Align
- Phase correlation stitching
- Basic tile registration
- Z-drift correction
- Global optimization refinement
- Multi-round alignment
- Cross-session registration
Enhance
- Background subtraction
- Flat-field correction
- Intensity normalization
- GPU Richardson-Lucy deconvolution
- Wiener deconvolution
- Theoretical & measured PSF estimation
Scale
- Images up to ~10 GB
- Standard TIFF/OME-TIFF export
- Basic pyramidal output
- Zarr/Dask block processing
- Terabyte dataset support
- Multi-resolution pyramid generation
Downstream Integration
ConductPrep feeds directly into every ConductVision analysis module.
Cell Counting & Stereology
Stitched tissue sections → unbiased cell counts
Learn more →Vessel Reconstruction
Aligned vascular stacks → 3D vessel trees
Learn more →Fluorescence Colocalization
Multi-channel aligned images → overlap quantification
Learn more →Brain Atlas Registration
Preprocessed brain sections → atlas-mapped coordinates
Learn more →Built for Core Facilities
Processing speed and feature depth for high-throughput imaging cores.
Tested on 64 GB RAM, NVIDIA RTX 4090. Lower is faster.
Pricing
Basic
Included with Microscopy License
- 150+ format conversion
- Phase correlation stitching
- Background subtraction
- Flat-field correction
- Images up to ~10 GB
- Standard TIFF/OME-TIFF export
ConductPrep Pro
GPU acceleration, batch processing, 10K+ tile stitching
- GPU Richardson-Lucy & Wiener deconvolution
- Terabyte-scale Zarr/Dask processing
- Batch import, CLI, watch-folder
- Global optimization stitching
- Multi-resolution pyramid generation
- PSF estimation (theoretical & measured)
