MCAOFocal Ischemia
Background: C57BL/6J
Infarct LocationMCA territory (striatum + cortex)
Motor DeficitImmediate (minutes)
Cognitive Deficit24–72 hours
Test Window24 hours to 4 weeks post-stroke
Gold standard for focal cerebral ischemia. A silicon-coated monofilament is advanced through the internal carotid artery to occlude the MCA origin. Transient MCAO (60–90 minutes) produces striatal and cortical infarction with reperfusion injury; permanent MCAO produces maximal infarction. Infarct volume is reproducible but variable between operators — laser Doppler confirmation of occlusion is essential. Mortality is 10–20% in experienced hands.
Ideal for: Neuroprotection and reperfusion studies; clinically relevant large-vessel occlusion modeling; studies requiring both motor and cognitive outcomes.
Engel O, et al. (2011). Modeling stroke in mice - middle cerebral artery occlusion with the filament model. J Vis Exp, (47), 2423. PMID: 21248698
MCAO Behavioral Battery
Rotarod
Motor coordination recovery tracking. Severe deficits at 24 hours, partial recovery over 2–4 weeks. Accelerating protocol (4–40 RPM) is most sensitive to residual deficits.
View Rotarod Test→Grip Strength
Contralateral forelimb weakness is the primary motor deficit. Grip strength deficit correlates with infarct volume and tracks recovery over weeks.
View Grip Strength Test→Balance Beam
Foot slips and traversal time detect asymmetric motor deficits. Sensitive to contralateral deficits that may recover on rotarod. Beam width can be narrowed for increased sensitivity.
View Balance Beam Test→Morris Water Maze
Spatial learning and memory deficits emerge 3–7 days post-MCAO. Tests hippocampal function and cortical processing. Wait until motor deficits partially recover to avoid confounding swim ability.
View Morris Water Maze→Novel Object Recognition
Recognition memory deficits without the motor demands of water maze. Sensitive to cortical infarction. Can be tested earlier post-stroke than MWM.
View Novel Object Recognition→PhotothromboticFocal Ischemia
Background: C57BL/6J
Infarct LocationCortical (precise targeting)
Motor DeficitImmediate
Cognitive Deficit24–48 hours (if cortex involved)
Test Window24 hours to 8 weeks post-stroke
Rose bengal dye (10–30 mg/kg IV) is illuminated through the intact skull with a focused light source (cold light, 560 nm). Photochemical activation generates singlet oxygen that damages endothelium, triggering platelet aggregation and focal cortical thrombosis. Infarct size is controlled by illumination diameter, duration, and dye concentration. Produces a sharply demarcated cortical infarct with no penumbra — ideal for plasticity studies but less clinically representative than MCAO.
Ideal for: Cortical plasticity and recovery research; rehabilitation studies requiring consistent infarct placement; optical imaging of peri-infarct reorganization.
Watson BD, et al. (1985). Induction of reproducible brain infarction by photochemically initiated thrombosis. Ann Neurol, 17(5), 497-504. PMID: 4004172
Photothrombotic Behavioral Battery
Balance Beam
Precise cortical targeting allows selective forelimb motor cortex lesions. Foot slips on the beam detect contralateral deficits with high sensitivity. Excellent for tracking motor recovery over weeks.
View Balance Beam Test→Grip Strength
Contralateral grip strength deficit proportional to motor cortex infarct size. Rapid, quantitative readout for longitudinal recovery tracking.
View Grip Strength Test→Rotarod
Coordination deficits after motor cortex photothrombosis. Recovery trajectory depends on infarct size — small cortical lesions may recover fully by 2–3 weeks.
View Rotarod Test→Open Field Test
Post-stroke anxiety-like behavior and locomotor changes. Thigmotaxis may increase; total distance helps control for general activity when interpreting motor-specific tests.
View Open Field Test→Gait Analysis
Automated detection of asymmetric stride length, paw placement, and swing speed. Sensitive to subtle residual deficits that rotarod may miss during recovery.
View Automated Gait Analysis→Endothelin-1Focal Ischemia
Background: C57BL/6J or Sprague-Dawley (rat)
Infarct LocationTargeted (cortex, striatum, or hippocampus)
Motor Deficit30 minutes post-injection
Cognitive Deficit24–72 hours
Test Window24 hours to 4 weeks post-injection
Endothelin-1, a potent vasoconstrictor peptide, is applied topically to the cortical surface or injected stereotaxically near cerebral arteries. Produces dose-dependent, reversible vasoconstriction and focal ischemia at the injection site. Unlike MCAO, ET-1 can target specific cortical or subcortical regions. Infarct develops gradually over hours as vasoconstriction peaks. Spontaneous reperfusion occurs as ET-1 is metabolized, modeling transient ischemia.
Ideal for: Targeted regional ischemia (cortex, striatum, hippocampus); studies requiring gradual infarct evolution; smaller, more survivable infarcts than MCAO.
Windle V, et al. (2006). An analysis of four different methods of producing focal cerebral ischemia with endothelin-1 in the rat. Exp Neurol, 201(2), 324-334. PMID: 16740259
Endothelin-1 Behavioral Battery
Rotarod
Motor coordination deficits proportional to lesion size and location. Cortical motor area ET-1 produces deficits comparable to photothrombotic stroke; striatal injection produces milder impairment.
View Rotarod Test→Barnes Maze
Spatial learning deficits after cortical or hippocampal ET-1 injection. Dry-land alternative to MWM — avoids swim confounds in animals with motor impairment.
View Barnes Maze→Balance Beam
Sensitive to focal motor cortex lesions from ET-1. Contralateral foot slip rate increases proportionally with lesion size.
View Balance Beam Test→Novel Object Recognition
Cortical and hippocampal ET-1 injections impair recognition memory. Lower motor demand than maze tasks — suitable for early post-stroke testing.
View Novel Object Recognition→Open Field Test
Locomotor activity and anxiety-like behavior post-stroke. Controls for general activity level when interpreting cognitive test performance.
View Open Field Test→Global IschemiaGlobal Ischemia
Background: C57BL/6J
Infarct LocationHippocampal CA1 (selective)
Motor DeficitMinimal
Cognitive Deficit3–7 days
Test Window7–28 days post-ischemia
Bilateral common carotid artery occlusion for 15–20 minutes produces transient global forebrain ischemia. The hippocampal CA1 region is selectively vulnerable due to high metabolic demand and excitotoxic susceptibility. Produces delayed neuronal death in CA1 (peaking at 3–7 days) with relative sparing of motor cortex, striatum, and cerebellum. Models cardiac arrest and resuscitation outcomes in humans.
Ideal for: Selective hippocampal vulnerability studies; post-cardiac arrest cognitive impairment; hippocampal neuroprotection without motor confounds.
Traystman RJ. (2003). Animal models of focal and global cerebral ischemia. ILAR J, 44(2), 85-95. PMID: 12652003
Global Ischemia Behavioral Battery
Morris Water Maze
The primary outcome for global ischemia — hippocampal-dependent spatial learning is severely impaired while motor function is largely preserved. Testing at 7–14 days post-ischemia captures peak CA1 neuronal loss.
View Morris Water Maze→Barnes Maze
Spatial memory deficits parallel MWM impairment. Lower stress and no swim requirement — preferable for aged animals or protocols requiring repeated testing.
View Barnes Maze→Y-Maze Spontaneous Alternation
Rapid, training-free assessment of spatial working memory. Global ischemia reduces alternation rate, reflecting hippocampal dysfunction. Quick screen before more extensive MWM testing.
View Y-Maze→Novel Object Recognition
Recognition memory impairment following CA1 neuronal death. Perirhinal and hippocampal contributions make NOR sensitive to global ischemia. Low motor demand.
View Novel Object Recognition→Open Field Test
Confirms preserved locomotor function — critical control for interpreting cognitive deficits. Global ischemia should produce cognitive but not motor impairment if occlusion is calibrated correctly.
View Open Field Test→