Endpoint methods library
Circadian & activity rhythm endpoint

Activity onset

Clock time at which sustained daily activity begins, used as the phase marker for entrainment and phase-shift studies.

Unit
clock time or ZT/CT hours
Readout
Time of sustained activity onset relative to lights-off (ZT12) or, in DD, to subjective night (CT12)
Assays
Home-cage video tracking, running wheel, infrared beam-break, telemetry

Decision summary

Use activity onset when the question is about the timing (phase) of the circadian clock rather than how much the animal moves. Onset is the most stable phase reference in nocturnal rodents and anchors phase-shift, jet-lag, and entrainment analyses. It is only meaningful once the onset-detection rule, bin size, and activity threshold are fixed before scoring.

Primary valueTime of sustained activity onset relative to lights-off (ZT12) or, in DD, to subjective night (CT12)
Common unitsClock time, Zeitgeber time (ZT), or Circadian time (CT)
Compatible assaysHome-cage video tracking, running wheel, infrared beam-break, telemetry
Required boundaryOnset-detection rule, bin size, and activity threshold
Do not infer aloneRhythm strength, period length, or total activity

Measurement notes

Bin activity (commonly 1, 5, or 10 min), then detect onset with a fixed rule such as a threshold crossing sustained for a minimum number of bins, applied consistently across animals. Onset is read most reliably from a double-plotted actogram, where it forms the leading edge of the active band.

Interpretation limit

A shifted onset indicates a phase change, not a change in clock speed or rhythm amplitude. Masking by light, noise, or feeding can move apparent onset without moving the underlying pacemaker, so onset under constant conditions is more interpretable than onset under a bright light-dark cycle.

Data capture

Store animal ID, lighting condition (LD/DD/LL), bin size, onset rule and threshold, daily onset times, day index, and software or scorer version.

Confound checks
  • Masking of activity by light, noise, husbandry, or scheduled feeding.
  • Different onset thresholds or bin sizes across cohorts or software versions.
  • Low-amplitude or fragmented rhythms that have no clear onset edge.
  • Wheel availability, which sharpens onset and shortens period in some strains.
Reporting checklist
  • Lighting schedule and whether onset is referenced to ZT or CT.
  • Bin size, onset-detection rule, and activity threshold.
  • Number of days averaged and exclusion rules.
  • Activity measure used (distance, wheel revolutions, beam breaks).