Science Library

Behavioral & physiological endpoint methods.

Use these guides to define behavioral and physiological readouts before analysis: what was measured, which units apply, how the apparatus shapes the value, and what a methods section needs to include.

Browse endpoint methods
23
endpoint guides
3
methods checks
53
linked references

Behavioral & physiological endpoint guides

Start with the measured value, then check the unit, apparatus assumptions, common confounds, and minimum reporting details before comparing groups.

Methods index
Pain and nociception
Endpoint guide

Mechanical withdrawal threshold

Force at which a paw withdrawal response occurs during von Frey or electronic aesthesiometer testing.

Unitgrams or millinewtons
ConfoundFilament angle, habituation, paw placement
ReportStimulus series, cutoff rule, withdrawal definition
Fear and defensive behavior
Endpoint guide

Freezing

Percent time or duration spent immobile except for respiration during fear, threat, or defensive-behavior assays.

Unitpercent, seconds, bouts
ConfoundLow baseline locomotion before the cue or context exposure
ReportConditioning protocol, cue timing, shock parameters, and test context
Locomotor activity
Endpoint guide

Distance traveled

Total path length covered during a defined assay window, commonly used as an activity, exploration, or motor-confound readout.

Unitcm or m
ConfoundCamera calibration drift or mismatched pixel-to-distance conversion
ReportArena dimensions, lighting, session duration, and analysis window
Spatial occupancy
Endpoint guide

Time in zone

Duration or percentage of a trial spent inside a predefined arena, arm, chamber, target quadrant, platform, or stimulus zone.

Unitseconds or percent
ConfoundZone boundaries drawn differently between cohorts or sessions
ReportZone dimensions, coordinate calibration, and zone inclusion rule
Learning and task-completion
Endpoint guide

Escape latency

Time from trial start to reaching a hidden platform, escape box, shelter, goal arm, or other task-defined escape criterion.

Unitseconds
ConfoundDifferent trial cutoffs, start locations, or inter-trial intervals
ReportTask, apparatus dimensions, goal definition, and maximum trial duration
Motor coordination
Endpoint guide

Latency to fall

Time an animal remains on a rotating rod, beam, ladder, or elevated motor task before meeting a fall or failure criterion.

Unitseconds
ConfoundRod diameter, surface texture, acceleration rate, or calibration mismatch
ReportApparatus type, rod or beam dimensions, surface, speed range, and acceleration profile
Thermal nociception
Endpoint guide

Hot plate latency

Time from placement on a heated plate to a predefined nocifensive response such as hindpaw licking, withdrawal, shaking, or jumping.

Unitseconds
ConfoundPlate temperature drift or uneven heat distribution across the surface
ReportPlate temperature, verification method, response criterion, and cutoff duration
Spinal thermal reflex
Endpoint guide

Tail flick latency

Time from radiant heat or tail-immersion stimulus onset to tail withdrawal, flick, or removal according to a predefined cutoff rule.

Unitseconds
ConfoundTail temperature, circulation, pigmentation, or local tissue condition
ReportRadiant heat or immersion method, stimulus intensity, tail position, and cutoff
Plantar thermal nociception
Endpoint guide

Hargreaves paw withdrawal latency

Time from radiant heat application under the hind paw to paw withdrawal during plantar thermal testing.

Unitseconds
ConfoundPaw not flat on glass or animal moving during stimulus onset
ReportStimulus source, heat intensity, glass temperature, cutoff, and paw-side schedule
Startle reflex
Endpoint guide

Acoustic startle amplitude

Peak or integrated movement response to a startling acoustic pulse, usually measured with a force plate, accelerometer, or startle chamber.

Unitarbitrary units, grams-force, or volts
ConfoundHearing impairment or unmeasured acoustic threshold differences
ReportPulse intensity, duration, rise time, background noise, and response window
Reward and anhedonia
Endpoint guide

Sucrose preference

Percentage of total fluid intake consumed from a sucrose solution during a two-bottle or equivalent preference test.

Unitpercent of total fluid intake
ConfoundBottle side bias, leakage, evaporation, or inaccurate weighing
ReportSucrose concentration, test duration, bottle type, and position counterbalancing
Sensorimotor gating
Endpoint guide

Prepulse inhibition

Percent reduction in startle response when a weak prepulse precedes a stronger startling pulse.

Unitpercent inhibition
ConfoundLow or saturated pulse-alone startle amplitude compressing the PPI denominator
ReportPulse intensity, prepulse intensities, background noise, inter-stimulus intervals, and response window
Motor coordination
Endpoint guide

Rotarod latency to fall

Time an animal remains on an accelerating or fixed-speed rotating rod before falling, passive rotation, or task-defined failure.

Unitseconds
ConfoundAcceleration rate or rod diameter differs from the planned protocol
ReportRod model, diameter, texture, lane width, and calibration status
Skilled walking
Endpoint guide

Beam walk foot slips

Number or rate of paw slips while an animal traverses a narrow beam or balance beam under a defined scoring rule.

Unitcount or slips per step
ConfoundBeam width, height, texture, or lighting differs between sessions
ReportBeam dimensions, surface, height, goal box, lighting, and habituation procedure
Bradykinesia and motor coordination
Endpoint guide

Pole test turn/descent latency

Time to orient downward and descend a vertical pole during a task used to assess movement initiation and coordination.

Unitseconds
ConfoundPole diameter, surface texture, or height differs across cohorts
ReportPole dimensions, surface material, height, start orientation, and placement procedure
Reward and associative learning
Endpoint guide

Conditioned place preference score

Change in time spent in a cue-paired compartment after conditioning with a rewarding or aversive stimulus.

Unitseconds, percent, or preference score
ConfoundBaseline side bias or unbalanced compartment assignment
ReportApparatus layout, compartment cues, baseline session, and assignment method
Stress-coping behavior
Endpoint guide

Forced swim immobility

Duration spent floating with only movements needed to keep the head above water during a forced swim test.

Unitseconds or percent session time
ConfoundWater temperature, depth, cylinder diameter, or lighting differs between animals
ReportEthics-approved protocol, cylinder dimensions, water depth, temperature, and session length
Stress-coping behavior
Endpoint guide

Tail suspension immobility

Duration spent immobile while a mouse is suspended by the tail during a defined scoring window.

Unitseconds or percent session time
ConfoundTail-climbing or escape behavior differs by strain or setup
ReportSuspension apparatus, height, tape method, session length, and anti-climb setup
Recognition memory
Endpoint guide

Novel object discrimination index

Relative exploration of a novel object compared with a familiar object during a recognition-memory test.

Unitindex, ratio, percent, or seconds
ConfoundObject novelty, odor, size, texture, or stability is not counterbalanced
ReportObject dimensions, materials, cleaning, counterbalancing, and side assignment
Metabolic
Endpoint guide

Oxygen consumption (VO₂)

Volume of oxygen consumed per unit time, measured by open-flow respirometry, as a primary index of aerobic metabolic rate at rest or during exercise.

Unitml O₂/min, ml O₂/kg/min
ConfoundGas flow rate or chamber volume differences changing the resolved signal
ReportRespirometry mode (push or pull), chamber volume, and gas flow rate
Metabolic
Endpoint guide

Carbon dioxide production (VCO₂)

Volume of carbon dioxide produced per unit time, measured by open-flow respirometry, used with VO₂ to derive substrate use and energy expenditure.

Unitml CO₂/min, ml CO₂/kg/min
ConfoundHyperventilation or acid–base buffering inflating short-window VCO₂
ReportRespirometry mode, chamber volume, and gas flow rate
Metabolic
Endpoint guide

Respiratory exchange ratio (RER/RQ)

Ratio of CO₂ produced to O₂ consumed (VCO₂/VO₂), used to estimate the balance of fat versus carbohydrate oxidation.

Unitunitless (≈0.70–1.00)
ConfoundFeeding state and circadian phase moving RER across the fat–carbohydrate range
ReportFeeding state (fed/fasted), time of day, and ambient temperature
Metabolic
Endpoint guide

Energy expenditure (EE)

Whole-animal energy use per unit time, derived from VO₂ and VCO₂, reported per animal and normalized to body or lean mass.

Unitkcal/h, kJ/h, W
ConfoundBody and lean mass differences not adjusted with regression methods
ReportDerivation equation and the VO₂/VCO₂ averaging window
Methods checklist

Written for reproducible reporting

Define the measure

Behavior, event boundary, unit, epoch, and derived score are specified before interpretation.

Control sources of variation

Apparatus setup, handling, lighting, trial order, tracking quality, and exclusion rules stay visible.

Report enough to reproduce

Each guide turns the endpoint into methods language, data fields, and reporting requirements.