Endpoint methods library
Metabolic endpoint

Respiratory exchange ratio (RER/RQ)

Ratio of CO₂ produced to O₂ consumed (VCO₂/VO₂), used to estimate the balance of fat versus carbohydrate oxidation.

Unit
unitless (≈0.70–1.00)
Readout
VCO₂ ÷ VO₂ over a defined steady-state window
Assays
Home-cage metabolic chamber, fasted/fed challenges, graded treadmill exercise

Decision summary

Use RER when the question is substrate selection — which fuel is being oxidized. Values near 0.70 indicate fat oxidation and near 1.00 indicate carbohydrate; values above 1.00 usually signal hyperventilation or non-metabolic CO₂ rather than fuel. RER (at the mouth/chamber) and RQ (at the tissue) coincide only at steady state, so fix the analysis window and feeding state before comparing groups.

Primary valueVCO₂ ÷ VO₂ over a defined steady-state window
Common unitsUnitless ratio, typically 0.70–1.00
Compatible assaysHome-cage metabolic chamber, fasted/fed challenges, graded treadmill exercise
Required boundarySynchronized VO₂ and VCO₂ on the same flow and timeline
Do not infer aloneTotal energy expenditure, fat mass, or fitness

Measurement notes

Compute RER from VO₂ and VCO₂ sampled on the same timeline over a stable window; avoid transition periods where the gases lag each other. Record feeding state and time of day, because RER tracks the fed–fasted cycle as strongly as any intervention.

Interpretation limit

RER outside 0.70–1.00 should prompt a check for hyperventilation, acid buffering, leaks, or calibration error rather than a fuel interpretation. A shift in RER reflects substrate balance, not the amount of energy used, and is confounded by diet, feeding state, and exercise intensity.

Data capture

Store animal ID, feeding state, time of day, ambient temperature, paired VO₂ and VCO₂, sampling interval, steady-state window, RER value, activity state, calibration record, and instrument or software version.

Confound checks
  • Feeding state and circadian phase moving RER across the fat–carbohydrate range.
  • Hyperventilation, acid buffering, or chamber leaks pushing RER above 1.00.
  • Non-synchronized or noisy VO₂/VCO₂ during transitions.
  • Diet macronutrient composition shifting baseline RER.
  • Exercise intensity raising RER as carbohydrate use increases.
Reporting checklist
  • Feeding state (fed/fasted), time of day, and ambient temperature.
  • How VO₂ and VCO₂ were synchronized and the steady-state window.
  • Calibration for both O₂ and CO₂ analyzers.
  • Diet composition when relevant.
  • Activity state and, for exercise, the stage at which RER was read.
  • Any RER values above 1.00 and how they were handled.

Related workflow paths

Endpoint articles link to adjacent products, software workflows, and sibling endpoints where the connection is useful and already routable.